20.109(S13): Spring 2013 schedule

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(New page: {{Template:20.109(S13)}} <div style="padding: 10px; width: 640px; border: 5px solid #99FF66;"> <center> {| border=1px |'''MODULE''' |'''DAY''' |'''DATE''' |'''LECTURER''' |'''TA''' |'''...)
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===Table view with links===
<center>
<center>
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|  
|  
| [[20.109(S13):Lab tour | Orientation]]
| [[20.109(S13):Lab tour | Orientation]]
-
| *[[Media:20.109 OrientLect(S13).pdf | Introductory Lecture (PDF)]] <br>*[[Media:S13_Orient_Pre-Lab-ANS.pdf | Intro Pre-Lab, T/R]]
+
| *[[Media:20.109 OrientLect(S13).pdf | Introductory Lecture (PDF)]] <br>*[[Media:S13_Orient_Pre-Lab-ANS.pdf | Intro Pre-Lab, T/R]]<br>*[[Media:M1D0_SKH_prelab_final.pdf | Intro Pre-Lab, W/F]]
|--
|--
| colspan="7" |
| colspan="7" |
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| Thur/Fri Feb 7/8
| Thur/Fri Feb 7/8
| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [http://web.mit.edu/be/people/runstadler.shtml JR]
-
|  
+
| [[User:Ian_Tay |Ian]]
-
|  
+
| [[20.109(S13):Context-setting and primer design (Day1)| Context-setting and primer design]]
-
|
+
|*[[Media:20109_S13-M1Lec1_Runstadler.pdf | M1D1 Lecture]] <br>*[[Media:S13_M1D1-ANS.pdf | T/R Pre-Lab]]<br>*[[Media:M1D1_lab_SKH.pdf | W/F Pre-Lab]]
|--
|--
| 1
| 1
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| Tue/Wed Feb 12/13  
| Tue/Wed Feb 12/13  
| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [http://web.mit.edu/be/people/runstadler.shtml JR]
-
|  
+
| [[User:Ian_Tay |Ian]]
-
|  
+
| [[20.109(S13):DNA extraction (Day2)| DNA extraction]]
-
|
+
|*[[Media:20109_S13-M1Lec2_Runstadler.pdf | M1D2 Lecture]] <br>*[[Media:S13_M1D2-ANS.pdf | T/R Pre-Lab (green text added later)]]<br>*[[Media:M1D2_lab_SKH_final.pdf | W/F Pre-Lab]]<br>[[Media:20.109_SP13_Roldan.pdf | T/R WAC talk]]<br>[[Media:20.109S13INTROmpo.pdf | W/F WAC talk]]
|--
|--
| 1
| 1
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| Thur/Fri Feb 14/15
| Thur/Fri Feb 14/15
| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [http://web.mit.edu/be/people/runstadler.shtml JR]
-
|  
+
| [[User:Ian_Tay |Ian]]
-
|  
+
| [[20.109(S13):PCR and paper discussion (Day3)| PCR and paper discussion]]
-
|
+
|*[[Media:20109_S13-M1Lec3_Runstadler.pdf | M1D3 Lecture]] <br>*[[Media:S13_M1D3-ANS.pdf | T/R Pre-Lab]]<br>*[[Media:M1D3_lab_SKH_final.pdf | W/F Pre-Lab]]
|--
|--
|
|
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| Thur/Fri Feb 21/22
| Thur/Fri Feb 21/22
| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [http://web.mit.edu/be/people/runstadler.shtml JR]
-
|  
+
| [[User:Ian_Tay |Ian]]
-
|  
+
| [[20.109(S13):DNA cloning (Day4)| DNA cloning]]
-
|
+
|*[[Media:20109_S13-M1Lec4_Runstadler.pdf | M1D4 Lecture]] <br>*[[Media:S13_M1D4-ANS.pdf | T/R Pre-Lab]]<br>*[[Media:M1D4_SKH.pdf | W/F Pre-Lab]]
|--
|--
| 1
| 1
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| Tue/Wed Feb 26/27  
| Tue/Wed Feb 26/27  
| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [http://web.mit.edu/be/people/runstadler.shtml JR]
-
|  
+
| [[User:Ian_Tay |Ian]]
-
|  
+
| [[20.109(S13):DNA sequencing and primer analysis (Day5)| DNA sequencing and primer analysis]]
-
|
+
|*[[Media:20109_S13-M1Lec5_Runstadler.pdf | M1D5 Lecture]] <br>*[[Media:S13_M1D5-ANS.pdf | T/R Pre-Lab]]<br>*[[Media:M1D5_SKH_Final.pdf | W/F Pre-Lab]]
|--
|--
| 1
| 1
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| Thur/Fri Feb 28/ Mar 1
| Thur/Fri Feb 28/ Mar 1
| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [http://web.mit.edu/be/people/runstadler.shtml JR]
-
|  
+
| [[User:Ian_Tay |Ian]]
-
|  
+
| [[20.109(S13):Journal club I (Day6)| Journal club I]]
-
|
+
|*[[Media:20109_S13-M1Lec6_Runstadler.pdf | M1D6 Lecture]]
|--
|--
| 1
| 1
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| Tue/Wed Mar 5/6  
| Tue/Wed Mar 5/6  
| [http://web.mit.edu/be/people/runstadler.shtml JR]
| [http://web.mit.edu/be/people/runstadler.shtml JR]
-
|  
+
| [[User:Ian_Tay |Ian]]
-
|  
+
| [[20.109(S13):Phylogenetic analysis (Day7)| Phylogenetic analysis]]
|
|
|--
|--
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| 8
| 8
| Thur/Fri Mar 7/8
| Thur/Fri Mar 7/8
-
| [http://web.mit.edu/be/people/runstadler.shtml JR]
+
| NO LECTURE TODAY
-
|
+
|  
|  
 +
| [[20.109(S13):Journal club II (Day8)| Journal club II]]
|
|
-
|--
 
-
| colspan="7" |
 
-
|--
 
-
| 3
 
-
| 1
 
-
| Tue Mar 13
 
-
| [[User:AgiStachowiak | ANS]]
 
-
|[[User:Han-Hwa Hung| HHH]]
 
-
|[[20.109(S12):Start-up biomaterials engineering (Day1)| Start-up biomaterials engineering]]
 
-
| *[[Media:20109_S12-M3Lec1_Stachowiak.pdf | M3D1 Lecture]] <br>*[[Media:S12_M3D1-ANS.pdf | M3D1 Pre-Lab]]<br><font color = CC0000><b>Module 1 Draft Due</b></font color><br>
 
|--
|--
| colspan="7" |  
| colspan="7" |  
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| 2
| 2
| 1
| 1
-
| Thur Mar 15
+
| Tue/Wed Mar 12/13
| [http://web.mit.edu/be/people/jasanoff.shtml AJ]
| [http://web.mit.edu/be/people/jasanoff.shtml AJ]
-
| [[User:Fahim Farzadfard| FF]]
+
| [[User:Mark_Mimee |MM]]
-
|[[20.109(S12):Start-up protein engineering (Day1)| Start-up protein engineering]]
+
|[[20.109(S13):Design mutant (Day1)| Design mutant]]
-
|*[[Media:20109_S12-M2Lec1_Jasanoff.pdf | M2D1 Lecture]] <br>*[[Media:S12_M2D1-ANS.pdf | M2D1 Pre-Lab]]<br><font color = CC0000><b>Module 1 Computational Assignment Due</b></font color><br>
+
|<br><font color = CC0000><b>Module 1 Draft Due</b></font color><br>
|--
|--
| 2
| 2
| 2
| 2
-
| Tue Mar 20
+
| Thur/Fri Mar 14/15
-
| [http://web.mit.edu/be/people/jasanoff.shtml AJ]
+
| [http://web.mit.edu/be/people/jasanoff.shtml AJ]  
-
| [[User:Fahim Farzadfard| FF]]
+
|[[User:Mark_Mimee |MM]]
-
|[[20.109(S12):Site-directed mutagenesis (Day2)| Site-directed mutagenesis]]
+
|[[20.109(S13):Site-directed mutagenesis (Day2)| Site-directed mutagenesis]]
-
|*[[Media:20109_S12-M2Lec2_Jasanoff.pdf | M2D2 Lecture]] <br>*[[Media:S12_M2D2-ANS.pdf | M2D2 Pre-Lab]]
+
|
|--
|--
| 2
| 2
| 3
| 3
-
| Thur Mar 22
+
| Tue/Wed Mar 19/20
| [http://web.mit.edu/be/people/jasanoff.shtml AJ]
| [http://web.mit.edu/be/people/jasanoff.shtml AJ]
-
| [[User:Fahim Farzadfard| FF]]
+
| [[User:Mark_Mimee |MM]]
-
|[[20.109(S12):Bacterial amplification of DNA (Day3)| Bacterial amplification of DNA]]
+
|[[20.109(S13):Bacterial amplification of DNA (Day3)| Bacterial amplification of DNA]]
-
|*[[Media:20109_S12-M2Lec3_Jasanoff.pdf | M2D3 Lecture]] <br>*[[Media:S12_M2D3-ANS.pdf | M2D3 Pre-Lab]]
+
|<br><font color = CC0000><b>Module 1 Primer Summary Due</b></font color><br>
|--
|--
 +
| 2
 +
| 4
 +
| Thur/Fri Mar 21/22
 +
| [http://web.mit.edu/be/people/jasanoff.shtml AJ]
 +
|[[User:Mark_Mimee |MM]]
 +
|[[20.109(S13):Prepare expression system (Day4)| Prepare expression system]]
|
|
 +
|--
|
|
-
! colspan="4" | Spring Break Mar 26-30
+
|
 +
! colspan="4" | Spring Break Mar 25-29
| '''No lab all week'''
| '''No lab all week'''
-
|--
 
-
| 2
 
-
| 4
 
-
| Tue Apr 3
 
-
| [http://web.mit.edu/be/people/jasanoff.shtml AJ]
 
-
| [[User:Fahim Farzadfard| FF]]
 
-
|[[20.109(S12):Prepare expression system (Day4)| Prepare expression system]]
 
-
||*[[Media:20109_S12-M2Lec4_Jasanoff.pdf | M2D4 Lecture]] <br>*[[Media:S12_M2D4-ANS.pdf | M2D4 Pre-Lab]]
 
|--
|--
| 2
| 2
| 5
| 5
-
| Thur Apr 5
+
| Tue/Wed Apr 2/3
| [http://web.mit.edu/be/people/jasanoff.shtml AJ]
| [http://web.mit.edu/be/people/jasanoff.shtml AJ]
-
| [[User:Fahim Farzadfard| FF]]
+
| [[User:Mark_Mimee |MM]]
-
|[[20.109(S12):Induce protein and evaluate DNA (Day5)| Induce protein and evaluate DNA]]
+
|[[20.109(S13):Induce protein and evaluate DNA (Day5)| Induce protein and evaluate DNA]]
-
|*[[Media:20109_S12-M2Lec5_Jasanoff.pdf | M2D5 Lecture]] <br>*[[Media:S12_M2D5-ANS.pdf | M2D5 Pre-Lab]]<br><font color = CC0000><b>Module 1 Final Report Due</b></font color><br>
+
|
|--
|--
| 2
| 2
| 6
| 6
-
| Tue Apr 10
+
| Thur/Fri Apr 4/5
-
| [http://web.mit.edu/be/people/jasanoff.shtml AJ]
+
| [http://web.mit.edu/be/people/jasanoff.shtml AJ]  
-
| [[User:Fahim Farzadfard| FF]]
+
|[[User:Mark_Mimee |MM]]
-
|[[20.109(S12):Characterize protein expression (Day6)| Characterize protein expression]]
+
|[[20.109(S13):Purify protein (Day6)| Purify protein]]
-
|*[[Media:20109_S12-M2Lec6_Jasanoff.pdf | M2D6 Lecture (got through slide 15)]] <br>*[[Media:S12_M2D6-ANS.pdf | M2D6 Pre-Lab]]
+
|<br><font color = CC0000><b>Module 1 Revision Due</b></font color><br>
|--
|--
| 2
| 2
| 7
| 7
-
| Thur Apr 12
+
| Tue/Wed Apr 9/10
| [http://web.mit.edu/be/people/jasanoff.shtml AJ]
| [http://web.mit.edu/be/people/jasanoff.shtml AJ]
-
| [[User:Fahim Farzadfard| FF]]
+
| [[User:Mark_Mimee |MM]]
-
|[[20.109(S12):Assess protein function (Day7)| Assess protein function]]
+
|[[20.109(S13):Characterize protein expression (Day7)| Characterize protein expression]]
-
|*[[Media:20109_S12-M2Lec7_Jasanoff.pdf | M2D7 Lecture]] <br>*[[Media:S12_M2D7-ANS.pdf | M2D7 Pre-Lab]]
+
|
|--
|--
 +
| 2
 +
| 8
 +
| Thur/Fri Apr 11/12
 +
| [http://web.mit.edu/be/people/jasanoff.shtml AJ]
 +
|[[User:Mark_Mimee |MM]]
 +
|[[20.109(S13):Assess protein function (Day8)| Assess protein function]]
|
|
 +
|--
|
|
-
! colspan="4" | Patriot's Day April 16-17
+
|
-
| '''No lab Apr 17 or Apr 18'''  
+
! colspan="4" | Patriot's Day April 15-16
 +
| '''No lab Apr 16 or Apr 17'''  
|--
|--
| colspan="7" |
| colspan="7" |
|--
|--
| 3
| 3
-
| 2
+
| 1
-
| Thur Apr 19  
+
| Thur/Fri Apr 18/19
| [[User:AgiStachowiak | ANS]]
| [[User:AgiStachowiak | ANS]]
-
| [[User:Han-Hwa Hung| HHH]]
+
|
-
| [[20.109(S12):Initiate cell culture (Day2)| Initiate cell culture]]
+
| [[20.109(S13):Design experiment (Day1)| Design experiment]]
-
| *[[Media:20109_S12-M3Lec2_Stachowiak.pdf | M3D2 Lecture]]
+
|  
|--
|--
-
|  
+
| 3
-
|  
+
| 2
-
| Tue Apr 24
+
| Tue/Wed Apr 23/24  
| [[User:AgiStachowiak | ANS]]
| [[User:AgiStachowiak | ANS]]
-
| [[User:Han-Hwa Hung| HHH]]
 
|  
|  
-
| No lab or lecture. <font color = CC0000><b>Module 2 Draft due MONDAY April 23rd by 1 pm. (Changed to April 24th.)</b></font color><br>
+
| [[20.109(S13):Initiate cell culture (Day2)| Initiate cell culture]]
 +
| <br><font color = CC0000><b>Module 2 Report Due MONDAY APRIL 22 by 5 pm for all.</b></font color><br>
|--
|--
| 3
| 3
| 3
| 3
-
| Thur Apr 26
+
| Thur/Fri Apr 25/26
| [[User:AgiStachowiak | ANS]]
| [[User:AgiStachowiak | ANS]]
-
| [[User:Han-Hwa Hung| HHH]]
+
|
-
| [[20.109(S12):Testing cell viability (Day3)| Testing cell viability]]
+
| [[20.109(S13):Testing cell viability (Day3)| Testing cell viability]]
-
| *[[Media:20109_S12-M3Lec3_Stachowiak.pdf | M3D3 Lecture]]
+
|  
|--
|--
| 3
| 3
| 4
| 4
-
| Tue May 1
+
| Tue/Wed Apr 30/May 1  
| [[User:AgiStachowiak | ANS]]
| [[User:AgiStachowiak | ANS]]
-
| [[User:Han-Hwa Hung| HHH]]
+
|  
-
| [[20.109(S12):Preparing cells for analysis (Day4)| Preparing cells for analysis]]
+
| [[20.109(S13):Preparing cells for analysis (Day4)| Preparing cells for analysis]]
-
| *[[Media:20109_S12-M3Lec4_Stachowiak.pdf | M3D4 Lecture]] <br>*[[Media:S12_M3D4-ANS.pdf | M3D4 Pre-Lab]]
+
|  
|--
|--
| 3
| 3
| 5
| 5
-
| Thur May 3
+
| Thur/Fri May 2/3
| [[User:AgiStachowiak | ANS]]
| [[User:AgiStachowiak | ANS]]
-
| [[User:Han-Hwa Hung| HHH]]
+
|
-
|[[20.109(S12):Initiating transcript and protein assays (Day5)| Initiating transcript and protein assays]]
+
| [[20.109(S13):Initiating transcript and protein assays (Day5)| Initiating transcript and protein assays]]
-
| *[[Media:20109_S12-M3Lec5_Stachowiak.pdf | M3D5 Lecture]] <br>*[[Media:S12_M3D5-ANS.pdf | M3D5 Pre-Lab]]
+
|  
|--
|--
| 3
| 3
| 6
| 6
-
| Tue May 8
+
| Tue/Wed May 7/8
| [[User:AgiStachowiak | ANS]]
| [[User:AgiStachowiak | ANS]]
-
| [[User:Han-Hwa Hung| HHH]]
+
|  
-
| [[20.109(S12):Transcript-level analysis (Day6)| Transcript-level analysis]]
+
| [[20.109(S13):Transcript-level analysis (Day6)| Transcript-level analysis]]
-
| <font color = CC0000><b>Module 2 Final Report Due</b></font color><br>*[[Media:20109_S12-M3Lec6_Stachowiak.pdf | M3D6 Lecture]] <br>*[[Media:S12_M3D6-ANS.pdf | M3D6 Pre-Lab]]
+
|  
|--
|--
| 3
| 3
| 7
| 7
-
| Thur May 10
+
| Thur/Fri May 9/10
| [[User:AgiStachowiak | ANS]]
| [[User:AgiStachowiak | ANS]]
-
| [[User:Han-Hwa Hung| HHH]]
+
|
-
| [[20.109(S12):Protein-level and wrap-up analysis (Day7)| Protein-level and wrap-up analysis]]
+
| [[20.109(S13):Protein-level and wrap-up analysis (Day7)| Protein-level and wrap-up analysis]]
-
| <font color = CC0000><b>Module 3 Summary Due</b></font color><br>
+
| <br><font color = CC0000><b>Module 3 Summary Due</b></font color><br>
|--
|--
| 3
| 3
| 8
| 8
-
| Tue May 15
+
| Tue/Wed May 14/15
| [[User:AgiStachowiak | ANS]]
| [[User:AgiStachowiak | ANS]]
-
| [[User:Han-Hwa Hung| HHH]]
+
|  
-
| [[20.109(S12):Student presentations (Day8) | Student presentations]]
+
| [[20.109(S13):Student presentations (Day8)| Student presentations]]
-
|
+
|  
|--
|--
| colspan="7" |  
| colspan="7" |  
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|
|
|
|
-
| Thur May 17
+
| Thur May 16
|
|
|
|
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|
|
|}
|}
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</center>
 +
<br style="clear:both;"/>
 +
 +
===Google calendar view===
 +
 +
I have decided to invite you all to the calendar instead of embedding it here, due to color-coding of assignments not being transferred upon embedding. Please let me know if you did not receive an invitation.
 +
 +
So far quiz dates and major assignments are included. Soon dates for lab notebooks and reflections will be included, along with links to homework assignments.
 +
 +
Correction: I will embed (for those who want privacy), and also invite (for those who want to use their gmail accounts).
 +
 +
<html><iframe src="https://www.google.com/calendar/embed?src=89c4e1q4e1kcncrq5s08qrqk9o%40group.calendar.google.com&ctz=America/New_York" style="border: 0" width="800" height="600" frameborder="0" scrolling="no"></iframe> </html>

Revision as of 10:43, 3 March 2013

20.109(S13): Laboratory Fundamentals of Biological Engineering

Home        Schedule Spring 2013        Assignments       
DNA Engineering        Protein Engineering        Cell Engineering              

Table view with links

MODULE DAY DATE LECTURER TA LAB NOTES
Tue/Wed Feb 5/6 ANS Orientation * Introductory Lecture (PDF)
* Intro Pre-Lab, T/R
* Intro Pre-Lab, W/F
1 1 Thur/Fri Feb 7/8 JR Ian Context-setting and primer design * M1D1 Lecture
* T/R Pre-Lab
* W/F Pre-Lab
1 2 Tue/Wed Feb 12/13 JR Ian DNA extraction * M1D2 Lecture
* T/R Pre-Lab (green text added later)
* W/F Pre-Lab
T/R WAC talk
W/F WAC talk
1 3 Thur/Fri Feb 14/15 JR Ian PCR and paper discussion * M1D3 Lecture
* T/R Pre-Lab
* W/F Pre-Lab
President's Day Feb 18 No lab Feb 19 or Feb 20
1 4 Thur/Fri Feb 21/22 JR Ian DNA cloning * M1D4 Lecture
* T/R Pre-Lab
* W/F Pre-Lab
1 5 Tue/Wed Feb 26/27 JR Ian DNA sequencing and primer analysis * M1D5 Lecture
* T/R Pre-Lab
* W/F Pre-Lab
1 6 Thur/Fri Feb 28/ Mar 1 JR Ian Journal club I * M1D6 Lecture
1 7 Tue/Wed Mar 5/6 JR Ian Phylogenetic analysis
1 8 Thur/Fri Mar 7/8 NO LECTURE TODAY Journal club II
2 1 Tue/Wed Mar 12/13 AJ MM Design mutant
Module 1 Draft Due
2 2 Thur/Fri Mar 14/15 AJ MM Site-directed mutagenesis
2 3 Tue/Wed Mar 19/20 AJ MM Bacterial amplification of DNA
Module 1 Primer Summary Due
2 4 Thur/Fri Mar 21/22 AJ MM Prepare expression system
Spring Break Mar 25-29 No lab all week
2 5 Tue/Wed Apr 2/3 AJ MM Induce protein and evaluate DNA
2 6 Thur/Fri Apr 4/5 AJ MM Purify protein
Module 1 Revision Due
2 7 Tue/Wed Apr 9/10 AJ MM Characterize protein expression
2 8 Thur/Fri Apr 11/12 AJ MM Assess protein function
Patriot's Day April 15-16 No lab Apr 16 or Apr 17
3 1 Thur/Fri Apr 18/19 ANS Design experiment
3 2 Tue/Wed Apr 23/24 ANS Initiate cell culture
Module 2 Report Due MONDAY APRIL 22 by 5 pm for all.
3 3 Thur/Fri Apr 25/26 ANS Testing cell viability
3 4 Tue/Wed Apr 30/May 1 ANS Preparing cells for analysis
3 5 Thur/Fri May 2/3 ANS Initiating transcript and protein assays
3 6 Tue/Wed May 7/8 ANS Transcript-level analysis
3 7 Thur/Fri May 9/10 ANS Protein-level and wrap-up analysis
Module 3 Summary Due
3 8 Tue/Wed May 14/15 ANS Student presentations
Thur May 16 No lab session. Evaluations during lecture, then celebratory lunch, room/time TBD


Google calendar view

I have decided to invite you all to the calendar instead of embedding it here, due to color-coding of assignments not being transferred upon embedding. Please let me know if you did not receive an invitation.

So far quiz dates and major assignments are included. Soon dates for lab notebooks and reflections will be included, along with links to homework assignments.

Correction: I will embed (for those who want privacy), and also invite (for those who want to use their gmail accounts).

Personal tools