20.109(F14): Fall 2014 schedule: Difference between revisions

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| Thu/Fri Sept 4/5   
| Thu/Fri Sept 4/5   
| [[User:Shannon K. Alford |SKH]]  
| [[User:Shannon K. Alford |SKH]]  
|  
| [[User:Isaak E. Mueller | IM]]
| [[20.109(F14):Lab tour | Orientation]]
| [[20.109(F14):Lab tour | Orientation]]
|
|
| *[[Media:Orientation_Lecture_20109_F13.pdf| Introductory Lecture (PDF)]]  
| *[[Media:Orientation_Lecture_20109_F14.pdf| Introductory Lecture (PDF)]] <br> [[Media:M1D0_F14_SKH_prelab.pdf | SKH Prelab]]<br>[[Media:F14_M0D0-ANS.pdf | ANS Prelab]]
|
|
|--
|--
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| Tue/Wed Sept 9/10  
| Tue/Wed Sept 9/10  
| [[User:Shannon K. Alford |SKH]]
| [[User:Shannon K. Alford |SKH]]
|  
| [[User:Isaak E. Mueller | IM]]
| [[20.109(F14): Mod 1 Day 1 DNA engineering using PCR | DNA engineering using PCR]]
| [[20.109(F14): Mod 1 Day 1 DNA engineering using PCR | DNA engineering using PCR]]
| [http://openwetware.org/wiki/20.109%28F14%29:Lab_tour#For_Next_Time Yes]
| [http://openwetware.org/wiki/20.109%28F14%29:Lab_tour#For_Next_Time Yes]
| <br><font color = red><b>lab practical quiz today</b></font color><br>
| [[Media:M1D1_SKH_F14_Final.pdf | Lecture]]<br><font color = red><b>lab practical quiz today</b></font color><br>[[Media:M1D1_SKH_prelab_F14_final.pdf | SKH Prelab]]<br>[[Media:F14_M1D1-ANS.pdf | ANS Prelab]]
|--
|--
| 1
| 1
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| Thu/Fri Sept 11/12   
| Thu/Fri Sept 11/12   
| [[Natalie Kuldell | NK]]
| [[Natalie Kuldell | NK]]
|  
| [[User:Isaak E. Mueller | IM]]
|[[20.109(F14): Mod 1 Day 2 Clean and cut DNA | Clean and cut DNA]]
|[[20.109(F14): Mod 1 Day 2 Clean and cut DNA | Clean and cut DNA]]
|
|
|
|[[Media:20.109(F14) M1D2.pdf| Lecture]]<br>[[Media:M1D2_SKH_F14_final.pdf | SKH Prelab]]<br>[[Media:F14_M1D2-ANS.pdf | ANS Prelab]]
|--
|--
| 1
| 1
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| Tue/Wed Sept 16/17   
| Tue/Wed Sept 16/17   
| WAC lecture
| WAC lecture
|  
| [[User:Isaak E. Mueller | IM]]
| [[20.109(F14): Mod 1 Day 3 Agarose gel electrophoresis| Agarose gel electrophoresis]]
| [[20.109(F14): Mod 1 Day 3 Agarose gel electrophoresis| Agarose gel electrophoresis]]
| [http://openwetware.org/wiki/20.109%28F14%29:_Mod_1_Day_1_DNA_engineering_using_PCR#For_next_week_.28Due_M1D3.29 Yes]
| [http://openwetware.org/wiki/20.109%28F14%29:_Mod_1_Day_1_DNA_engineering_using_PCR#For_next_week_.28Due_M1D3.29 Yes]
| <br><font color = green><b>lab quiz today</b></font color><br>
| <br><font color = green><b>lab quiz today</b></font color><br>[[Media:M1D3_SKH_F14_final.pdf|SKH PreLab]]<br>[[Media:F14_M1D3-ANS.pdf | ANS Prelab]]
|--
|--
| 1
| 1
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| Tue/Wed Sept 23/24   
| Tue/Wed Sept 23/24   
| [[User:AgiStachowiak| AS]]
| [[User:AgiStachowiak| AS]]
|  
| [[User:Isaak E. Mueller | IM]]
| [[20.109(F14): Mod 1 Day 4 DNA ligations, bacterial transformations and CometChip| Ligation & Transformation and CometChip prep]]
| [[20.109(F14): Mod 1 Day 4 DNA Ligation & Transformation| Ligation & Transformation]]
| [http://openwetware.org/wiki/20.109%28F14%29:_Mod_1_Day_3_Agarose_gel_electrophoresis#For_next_week_.28Due_M1D4.29 Yes]
| [http://openwetware.org/wiki/20.109%28F14%29:_Mod_1_Day_3_Agarose_gel_electrophoresis#For_next_week_.28Due_M1D4.29 Yes]
| <br><font color = green><b>lab quiz today</b></font color><br>
| <br><font color = green><b>lab quiz today</b></font color><br>[[Media:M1D4_Lecture_BPE-ANS.pdf | Lecture]]<br>[[Media:F14_M1D4-Lecture_corrections-additions.pdf | Lecture correc-/addi-tions]]<br> [[Media:M1D4_F14_SKH_final.pdf| SKH Prelab]]<br>[[Media:F14_M1D4-ANS.pdf | ANS Prelab]]
|--
|--
| 1
| 1
| 5
| 5
| Thu/Fri Sept 25/26  
| Thu/Fri Sept 25/26  
| VS
| [http://web.mit.edu/be/people/samson.shtml LS]
| [[User:Isaak E. Mueller | IM]]
| [[20.109(F14): Mod 1 Day 5 Examine candidate clones & tissue culture| Examine candidate clones and Tissue Culture]]
|  
|  
| [[20.109(F14): Mod 1 Day 5 Examine candidate clones & tissue culture| Examine candidate clones and CometChip Tissue Culture]]
| *Today is a long day*<br>[[Media:20_109_Fall_2014_Lecture_5_LDS.pdf |Prof. Samson Lecture]]<br>[[Media:M1D5_F14_SKH_final.pdf|SKH Prelab]]<br>[[Media:F14_M1D5-ANS.pdf | ANS Prelab]]
|
| *Today is a long day*
|--
|--
| 1
| 1
| 6
| 6
| Tue/Wed Sept 30/ Oct 1  
| Tue/Wed Sept 30/ Oct 1  
| VS
| [http://web.mit.edu/be/people/samson.shtml LS]
|  
| [[User:Isaak E. Mueller | IM]]
| [[20.109(F14): Mod 1 Day 6 Lipofection and CometChip Analysis | Lipofection and CometChip Analysis]]
| [[20.109(F14): Mod 1 Day 6 Lipofection | Lipofection]]
| [[20.109(F14): Mod 1 Day 4 DNA ligations, bacterial transformations and CometChip| Yes]]
| [[20.109(F14): Mod 1 Day 4 DNA ligations, bacterial transformations and CometChip| Yes]]
| <br><font color = green><b>lab quiz today</b></font color><br>
| [[Media:20.109_Fall_2014_Lecture_6_LDS.pdf | Prof. Samson Lecture]]<br>[[Media:M1D6_F14_SKH_final.pdf |SKH Prelab]]<br>[[Media:F14_M1D6-ANS.pdf | ANS Prelab]]
|--
|--
| 1
| 1
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| Thu/Fri Oct 2/3  
| Thu/Fri Oct 2/3  
| [[User:AgiStachowiak| AS]]
| [[User:AgiStachowiak| AS]]
|  
| [[User:Isaak E. Mueller | IM]]
| [[20.109(F14): Mod 1 Day 7 FACS analysis| Data analysis]]
| [[20.109(F14): Mod 1 Day 7 FACS analysis| Data analysis]]
|
| <br><font color = green><b>Rescheduled: lab quiz today</b></font color><br>
|  
| [[Media:F14_M1D7-Stachowiak.pdf | Lecture]]
|--
|--
|  
|  
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| Tue/Wed Oct 7/8  
| Tue/Wed Oct 7/8  
| [[Natalie Kuldell | NK]]  
| [[Natalie Kuldell | NK]]  
| [[User:Yongjin Park| YP]]
| [[20.109(F14): Mod 2 Day 1 Testing an engineered biological system| Testing an engineered biological system]]
|  
|  
| [[20.109(F14): Mod 2 Day 1 Testing an engineered biological system| Testing an engineered biological system]]
| [[Media:20.109(F14) M2D1 lecture.pdf| Lecture]]<br> [[Media:M2D1 MarkedSlides copy.pdf | NLL Prelab]]<br>[[Media:F14_M2D1-ANS.pdf | ANS Prelab]]
|
|
|
|--
|--
| 2
| 2
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| Thu/Fri Oct 9/10  
| Thu/Fri Oct 9/10  
| [[Natalie Kuldell | NK]]   
| [[Natalie Kuldell | NK]]   
|  
| [[User:Yongjin Park| YP]]
| [[20.109(F14): Mod 2 Day 2 Measuring system performance | Measuring System Performance]]
| [[20.109(F14): Mod 2 Day 2 Measuring system performance | Measuring System Performance]]
|
|
| <br><font color = green><b>lab quiz today</b></font color><br><font color = CC0000><b>M1 Abstract and Data Summary Due Fri/Sat</b></font color><br>
| <br><font color = green><b>lab quiz today</b></font color><br><font color = CC0000><b>M1 Abstract and Data Summary Due Fri/Sat at 5pm</b></font color><br>[[Media:20.109(F14) M2D2 lecture.pdf| Lecture]]<br> [[Media:M2D2 MarkedSlides.pdf| NLL Prelab]]<br>[[Media:F14_M2D2-ANS.pdf | ANS Prelab]]
|--
|--
| colspan="8" |
| colspan="8" |
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| Thu/Fri Oct 16/17  
| Thu/Fri Oct 16/17  
| [[Natalie Kuldell | NK]]   
| [[Natalie Kuldell | NK]]   
|  
| YP
| [[20.109(F14): Mod 2 Day 3 Tools for system engineering | Tools for System Engineering]]
| [[20.109(F14): Mod 2 Day 3 Tools for system engineering | Tools for System Engineering]]
|[yes]
|[http://openwetware.org/wiki/20.109%28F14%29:_Mod_2_Day_1_Testing_an_engineered_biological_system#For_Next_Week_.28Due_M2D3.29 Yes]
|
|[[Media:20.109(F14) M2D3 lecture.pdf| Lecture]]<br> [[Media:M2D3 MarkedSlides.pdf| NLL Prelab]]<br>[[Media:F14_M2D3-ANS.pdf | ANS Prelab]]
|--
|--
| 2
| 2
| 4
| 4
| Tue/Wed Oct 21/22  
| Tue/Wed Oct 21/22  
| [[Natalie Kuldell | NK]]
| [[User:Shannon K. Alford |SKH]]  
|  
| YP
| [[20.109(F14): Journal Club I| Journal Club I]]
| [[20.109(F14): Journal Club I| Journal Club I]]
|
|
| <br><font color = green><b>lab quiz today</b></font color><br>
| <br><font color = green><b>lab quiz today</b></font color><br>[[Media:M2D4_F14_SKH.pdf | SKH Lecture]]<br>[[Media:M2D4 Slides.pdf| NLL Prelab]]<br>[[Media:F14_M2D4-ANS.pdf | ANS Prelab]]
|--
|--
| 2
| 2
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| Thu/Fri Oct 23/24  
| Thu/Fri Oct 23/24  
| [[Natalie Kuldell | NK]]   
| [[Natalie Kuldell | NK]]   
|  
| YP
| [[20.109(F14): Mod 2 Day 5 Assessing re-tuned system | Assessing re-tuned system]]
| [[20.109(F14): Mod 2 Day 5 Assessing re-tuned system | Assessing re-tuned system]]
|[yes]
|[http://openwetware.org/wiki/20.109%28F14%29:_Mod_2_Day_3_Tools_for_system_engineering#For_Next_Week_.28Due_M2D5.29 Yes]
|
|[[Media:20.109(F14) M2D5 lecture.pdf| lecture]]<br> [[Media:M2D5 MarkedSlides.pdf| NLL Prelab]]<br>[[Media:F14_M2D5-ANS.pdf | ANS Prelab]]
|--
|--
| 2
| 2
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| Tue/Wed Oct 28/29  
| Tue/Wed Oct 28/29  
| [[Natalie Kuldell | NK]]   
| [[Natalie Kuldell | NK]]   
|  
| YP
| [[20.109(F14): Mod 2 Day 6 Readouts of DNA, Protein | Readout: DNA]]
| [[20.109(F14): Mod 2 Day 6 Readouts of DNA, Protein | Readout: DNA]]
|
|
|
|[[Media:20.109(F14) M2D6 lecture.pdf| Lecture]]<br> [[Media:M2D6 MarkedSlides.pdf| NLL Prelab]]<br>[[Media:F14_M2D6-ANS.pdf | ANS Prelab]]
|--
|--
| 2
| 2
| 7
| 7
| Thu/Fri Oct 30/31
| <font color = red>'''Tue/Wed Nov4/5'''</font color>
| [[Natalie Kuldell | NK]]   
| [[Natalie Kuldell | NK]]/YP  
|  
| YP
| [[20.109(F14): Mod 2 Day 7 Readout of Protein | Readout: Protein]]
| [[20.109(F14): Mod 2 Day 7 Readout of Protein | Readout: Protein]]
|[yes]
|[http://openwetware.org/wiki/20.109%28F14%29:_Mod_2_Day_5_Assessing_re-tuned_system#For_Next_Week_.28Due_M2D7.29 Yes] <font color = red> FNW due 10/30 or 10/31</font color>
|  
| [[Media:20.109(F14) M2D7 lecture.pdf| Lecture]]<br> [[Media:M2D8 MarkedSlides.pdf| NLL Prelab]]<br>[[Media:F14_M2D7.8-ANS.pdf | ANS Prelab]]
|--
|--
| 2
| 2
| 8
| 8
| Tue/Wed Nov 4/5
| <font color=red>'''Thu/Fri Oct 30/31'''</font color>
| [[Natalie Kuldell | NK]]   
| [[Natalie Kuldell | NK]]   
|  
| YP
| [[20.109(F14):Journal club II (Day8)| Journal club II]]
| [[20.109(F14):Journal club II (Day8)| Journal club II]]
|
|
| <br><font color = green><b>lab quiz today</b></font color><br>
| <br><font color = green><b>lab quiz today</b></font color><br>
|--
| 3
| 1
| Thu/Fri Nov 6/7 
| [[User:Abelcher| AB]]
| [[User: Tahoura Samad |TSS]]
| [[20.109(F14): Mod 3 Day 1 Growth of phage materials| Growth of phage materials]]
|
|[[Media:F14_M3D1-ANS.pdf | ANS Prelab]]
|--
|--
| colspan="8" |
| colspan="8" |
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! colspan="4" | Veteran's Day Break Monday Nov 10  
! colspan="4" | Veteran's Day Break Monday Nov 10  
|
|
| '''No lab Thurs or Fri Nov 6/7. <br><font color = CC0000>M2 Report Due Monday, Nov 10th 5pm </font color> <br>'''
| '''No lab Tues or Wed Nov 11 or 12. <br><font color = CC0000>M2 Report Due Wednesday (11/12) at Noon </font color> <br>'''
|--
|--
| colspan="8" |
| colspan="8" |
|--
| 3
| 1
| Tue/Wed Nov 11/12 
| [[User:Abelcher| AB]]
|
| [[20.109(F14): Mod 3 Day 1 Growth of phage materials| Growth of phage materials]]
|
|
|--
|--
| 3
| 3
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| Thu/Fri Nov 13/14
| Thu/Fri Nov 13/14
| [[User:Abelcher| AB]]
| [[User:Abelcher| AB]]
|  
| [[User: Tahoura Samad |TSS]]
| [[20.109(F14): Mod 3 Day 2 Phage nanowires| Phage nanowires]]
| [[20.109(F14): Mod 3 Day 2 Phage nanowires| Phage nanowires]]
|
|
| <br><font color = green><b>lab quiz today</b></font color><br>
| <br><font color = green><b>lab quiz today</b></font color><br> [[Media:Solar and TEM Introduction 20.109 2014.ppt| Lecture]] <br> [[Media:M3D2 MarkedSlides.pdf| NLL Prelab]] <br> [[Media:M3D2 MarkedSlides F.pdf| NLL Prelab (Friday)]]
|--
|--
| 3
| 3
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| Tue/Wed Nov 18/19  
| Tue/Wed Nov 18/19  
| [[User:Abelcher| AB]]
| [[User:Abelcher| AB]]
|
| TSS
|
| [[20.109(F14): Mod 3 Day 3 TEM| TEM]]
| [[20.109(F14): Mod 3 Day 3 TEM| TEM]]
|  
| [http://openwetware.org/wiki/20.109%28F14%29:_Mod_3_Day_1_Growth_of_phage_materials#For_next_week Yes]
| [[Media:M3D3_F14_SKH_final.pdf | SKH Prelab]]<br>[[Media:F14_M3D3-ANS.pdf | ANS Prelab]]
|--
|--
| 3
| 3
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| Thu/Fri Nov 20/21  
| Thu/Fri Nov 20/21  
| [[User:Abelcher| AB]]
| [[User:Abelcher| AB]]
|  
| [[User: Tahoura Samad |TSS]]
| [[20.109(F14): Mod 3 Day 4 Solar cell assembly| Solar cell assembly]]
| [[20.109(F14): Mod 3 Day 4 Solar cell assembly| Solar cell assembly]]
|
|
| <br><font color = green><b>lab quiz today</b></font color><br>
| <br><font color = green><b>lab quiz today</b></font color><br> [[Media:Thursday_lecture_20109.pdf| JO Lecture]] <br> [[Media:M3D4 MarkedSlides.pdf| NLL Prelab]]<br>[[Media:F14_M3D4-ANS.pdf | ANS Prelab]]
|--
|--
| colspan="8" |
| colspan="8" |
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| Tue/Wed Dec 2/3   
| Tue/Wed Dec 2/3   
| [[User:Abelcher| AB]]
| [[User:Abelcher| AB]]
|  
| [[User: Tahoura Samad |TSS]]
| [[20.109(F14): Mod 3 Day 5 Solar cell testing| Solar cell testing]]
| [[20.109(F14): Mod 3 Day 5 Solar cell testing| Solar cell testing]]
|
| [http://openwetware.org/wiki/20.109%28F14%29:_Mod_3_Day_3_TEM#For_next_week Yes]
| <br><font color = green><b>lab quiz today</b></font color><br>
| <br><font color = green><b>lab quiz today</b></font color><br> [[Media:20.109 last solar lecture 2014.pdf| Lecture]]<br>[[Media:M3D5_SKH_F14_final.pdf | SKH Prelab]]<br>[[Media:F14_M3D5-ANS.pdf | ANS Prelab]]
|--
|--
| 3
| 3
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| Thu/Fri Dec 4/5
| Thu/Fri Dec 4/5
| [[User:Abelcher| AB]]
| [[User:Abelcher| AB]]
|  
| [[User: Tahoura Samad |TSS]]
| [[20.109(F14): Mod 3 Day 6 Wrap-up and data summary| Wrap-up & data summary]]
| [[20.109(F14): Mod 3 Day 6 Wrap-up and data summary| Wrap-up & data summary]]
|
|
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| Tue/Wed Dec 9/10
| Tue/Wed Dec 9/10
| '''No lecture today.'''  
| '''No lecture today.'''  
|  
| [[User: Tahoura Samad |TSS]]
| [[20.109(F14): Mod 3 Day 7 Oral presentations| Research proposal presentations]]
| [[20.109(F14): Mod 3 Day 7 Oral presentations| Research proposal presentations]]
|
|

Latest revision as of 10:28, 4 December 2014


20.109(F14): Laboratory Fundamentals of Biological Engineering

Home        People        Schedule Fall 2014        Assignments        Lab Basics        OWW Basics       
DNA Engineering        System Engineering        Biomaterials Engineering              

MODULE DAY DATE LECTURER TA LAB FNW DUE? note
Thu/Fri Sept 4/5 SKH IM Orientation * Introductory Lecture (PDF)
SKH Prelab
ANS Prelab
1 1 Tue/Wed Sept 9/10 SKH IM DNA engineering using PCR Yes Lecture
lab practical quiz today
SKH Prelab
ANS Prelab
1 2 Thu/Fri Sept 11/12 NK IM Clean and cut DNA Lecture
SKH Prelab
ANS Prelab
1 3 Tue/Wed Sept 16/17 WAC lecture IM Agarose gel electrophoresis Yes
lab quiz today
SKH PreLab
ANS Prelab
1 Thu Sept 18 MIT Break Friday Sept 19
1 4 Tue/Wed Sept 23/24 AS IM Ligation & Transformation Yes
lab quiz today
Lecture
Lecture correc-/addi-tions
SKH Prelab
ANS Prelab
1 5 Thu/Fri Sept 25/26 LS IM Examine candidate clones and Tissue Culture *Today is a long day*
Prof. Samson Lecture
SKH Prelab
ANS Prelab
1 6 Tue/Wed Sept 30/ Oct 1 LS IM Lipofection Yes Prof. Samson Lecture
SKH Prelab
ANS Prelab
1 7 Thu/Fri Oct 2/3 AS IM Data analysis
Rescheduled: lab quiz today
 Lecture
Monday Oct 6
M1 Methods Due 5pm
2 1 Tue/Wed Oct 7/8 NK YP Testing an engineered biological system Lecture
NLL Prelab
ANS Prelab
2 2 Thu/Fri Oct 9/10 NK YP Measuring System Performance
lab quiz today
M1 Abstract and Data Summary Due Fri/Sat at 5pm
Lecture
NLL Prelab
ANS Prelab
Columbus Day Break Monday, Tues Oct 13, 14 No lab Tues or Wed
2 3 Thu/Fri Oct 16/17 NK YP Tools for System Engineering Yes Lecture
NLL Prelab
ANS Prelab
2 4 Tue/Wed Oct 21/22 SKH YP Journal Club I
lab quiz today
SKH Lecture
NLL Prelab
ANS Prelab
2 5 Thu/Fri Oct 23/24 NK YP Assessing re-tuned system Yes lecture
NLL Prelab
ANS Prelab
2 6 Tue/Wed Oct 28/29 NK YP Readout: DNA Lecture
NLL Prelab
ANS Prelab
2 7 Tue/Wed Nov4/5 NK/YP YP Readout: Protein Yes FNW due 10/30 or 10/31 Lecture
NLL Prelab
ANS Prelab
2 8 Thu/Fri Oct 30/31 NK YP Journal club II
lab quiz today
3 1 Thu/Fri Nov 6/7 AB TSS Growth of phage materials ANS Prelab
Veteran's Day Break Monday Nov 10 No lab Tues or Wed Nov 11 or 12.
M2 Report Due Wednesday (11/12) at Noon
3 2 Thu/Fri Nov 13/14 AB TSS Phage nanowires
lab quiz today
Lecture
NLL Prelab
NLL Prelab (Friday)
3 3 Tue/Wed Nov 18/19 AB TSS TEM Yes SKH Prelab
ANS Prelab
3 4 Thu/Fri Nov 20/21 AB TSS Solar cell assembly
lab quiz today
JO Lecture
NLL Prelab
ANS Prelab
Thanksgiving Break Nov 25-28 Lecture: yes, on Tuesday Nov 25th
Lab: none all week!
M2 Revision due Wednesday, Nov 26th 5pm
3 5 Tue/Wed Dec 2/3 AB TSS Solar cell testing Yes
lab quiz today
Lecture
SKH Prelab
ANS Prelab
3 6 Thu/Fri Dec 4/5 AB TSS Wrap-up & data summary M3 Data Summary Due
3 7 Tue/Wed Dec 9/10 No lecture today. TSS Research proposal presentations
Thu Dec 11 (OPTIONAL) end of term celebration... Meet to give feedback about class at 11 AM, then lunch/party from 11:30-1 PM, 16-220
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