20.109(F07): Fall 2007 schedule: Difference between revisions

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| Thur Sept 6  
| Thur Sept 6  
| [[Natalie Kuldell | NK]]
| [[Natalie Kuldell | NK]]
|  
| [[User:AliceLo| AL]]
| [[20.109(F07):Lab tour | Orientation]]
| [[20.109(F07):Lab tour | Orientation]]
|
| notes from the first lecture are [[Media:Orientation(F07) hndout.pdf| here]]
|--
|--
| colspan="7" |
| colspan="7" |
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| Tue Sept 11
| Tue Sept 11
| [[Drew Endy | DE]]
| [[Drew Endy | DE]]
|  
| [[Laure-Anne Ventouras| LAV]]
| [[20.109(F07):Start-up genome engineering | Start-up genome engineering]]
| [[20.109(F07):Start-up genome engineering | Start-up genome engineering]]
|  
| PDF copy of notes from discussion are [[Media:20109F7M1L1.pdf| here]]
|--
|--
| 1
| 1
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| Thur Sept 13  
| Thur Sept 13  
| [[Drew Endy | DE]]
| [[Drew Endy | DE]]
|  
| [[Laure-Anne Ventouras| LAV]]
| [[20.109(F07): Agarose gel electrophoresis | Agarose gel electrophoresis]]
| [[20.109(F07): Agarose gel electrophoresis | Agarose gel electrophoresis]]
|  
| PDF copy of notes from discussion are [[Media:20109F7M1L2.pdf| here]]
|--
|--
| 1
| 1
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| Tue Sept 18
| Tue Sept 18
| [[Drew Endy | DE]]
| [[Drew Endy | DE]]
|  
| [[Laure-Anne Ventouras| LAV]]
| [[20.109(F07): DNA ligation and bacterial transformation| DNA ligation and bacterial transformation]]
| [[20.109(F07): DNA ligation and bacterial transformation| DNA ligation and bacterial transformation]]
|
| PDF copy of notes from discussion are [[Media:20109F7M1L3.pdf| here]]
|--
|--
| 1
| 1
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| Thur Sept 20
| Thur Sept 20
| [[Drew Endy | DE]]
| [[Drew Endy | DE]]
|  
| [[Laure-Anne Ventouras| LAV]]
| [[20.109(F07): Examine candidate clones| Examine candidate clones]]
| [[20.109(F07): Examine candidate clones| Examine candidate clones]]
|
| PDF copy of slides from discussion are [[Media:20109F07M1L4st.pdf| here]]
|--
|--
| 1
| 1
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| Tue Sept 25
| Tue Sept 25
| [[Drew Endy | DE]]
| [[Drew Endy | DE]]
|  
| [[Laure-Anne Ventouras| LAV]]
| [[20.109(F07): M13.1| M13.1]]
| [[20.109(F07): M13.1| M13.1]]
|  
| PDF copy of slides from discussion are [[Media:20109F07M1L5.pdf| here]] (In lab we will hear from [[User:Atissa| the oral presenation]] instructor)
|--
|--
| 1
| 1
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| Thur Sept 27
| Thur Sept 27
| [[Drew Endy | DE]]
| [[Drew Endy | DE]]
|  
| [[Laure-Anne Ventouras| LAV]]
|  
| [[20.109(F07): Western analysis| Western analysis]]
|  
| PDF copy of slides from discussion are [[Media:20109F07M1L6.pdf | here]]
|--
|--
| 1
| 1
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| Tue Oct 2
| Tue Oct 2
| [[Drew Endy | DE]]
| [[Drew Endy | DE]]
|  
| [[Laure-Anne Ventouras| LAV]]
|  
| [[20.109(F07): Probe western| Probe western]]
|
| the first draft of your [[20.109(F07): Genome engineering assessment| genome engineering portfolio]] <b> Parts 1, 2, and 4 only </b> is due before you arrive in lab. During lab there will be a lecture from the [http://web.mit.edu/environment/ehs/about_ehs.html| EHS representative].  PDF copy of slides from discussion are [[Media:20109100207.pdf | here]].
|--
|--
| 1
| 1
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| Thur Oct 4
| Thur Oct 4
| [[Drew Endy | DE]]
| [[Drew Endy | DE]]
|  
| [[Laure-Anne Ventouras| LAV]]
|  
| [[20.109(F07): Module 1 oral presentations| Oral Presentations]]
|
| the first draft of your [[20.109(F07): Genome engineering assessment| genome engineering portfolio]] <b> Part 3 only </b> is due before you arrive in lab. 
|--
|--
| colspan="7" |
| colspan="7" |
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| Thur Oct 11
| Thur Oct 11
| [[Natalie Kuldell | NK]]
| [[Natalie Kuldell | NK]]
|  
| [[User:AliceLo| AL]]
| [[20.109(F07): Mod2 Day 1| siRNA design]]
| [[20.109(F07): siRNA design| siRNA design and start-up in cell culture]]
|
| PDF copy of lecture slides are [[Media:109(F07)M2D1 handout.pdf| here]]
|--
|--
| 2
| 2
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| Tue Oct 16
| Tue Oct 16
| [[Natalie Kuldell | NK]]
| [[Natalie Kuldell | NK]]
|
| [[User:AliceLo| AL]]
|  
| [[20.109(F07): Transfection| Transfection]]
|
| PDF copy of lecture slides are [[Media:109(F07) M2D2handout.pdf| here]]
|--
|--
| 2
| 2
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| Thur Oct 18  
| Thur Oct 18  
| [[Natalie Kuldell | NK]]
| [[Natalie Kuldell | NK]]
|  
| [[User:AliceLo| AL]]
|  
| [[20.109(F07): Luciferase assays and RNA prep| Luciferase assays and RNA prep]]
|
| PDF copy of lecture slides are [[Media:109(F07) M2D3handout.pdf| here]]
|--
|--
| 2
| 2
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| Tues Oct 23
| Tues Oct 23
| [[Natalie Kuldell | NK]]
| [[Natalie Kuldell | NK]]
|  
| [[User:AliceLo| AL]]
|  
| [[20.109(F07): Journal article discussion| Journal article discussion]]
|
| Guest lecture: [[User:Nlerner| NL]] from the writing program. <br> PDF of his slides are on his user page as well as [[Media:20.109_F07.pdf|here (overview)]] and
[[Media:Guide_to_Scientific_Writing.pdf|here (Guide to Scientific Writing)]]
|-
|-
| 2
| 2
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| Thur Oct 25
| Thur Oct 25
| [[Natalie Kuldell | NK]]
| [[Natalie Kuldell | NK]]
|  
| [[User:AliceLo| AL]]
|  
| [[20.109(F07): cDNA synthesis and microarray| cDNA synthesis and microarray]]
|  
| PDF copy of lecture slides are [[Media:109(F07) M2D5handout.pdf| here]]
|--
|--
| 2
| 2
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| Tue Oct 30
| Tue Oct 30
| [[Natalie Kuldell | NK]]
| [[Natalie Kuldell | NK]]
|  
| [[User:AliceLo| AL]]
|  
| [[20.109(F07): Microarray data analysis| Microarray data analysis]]
|  
| guest lecture by [http://csbi.mit.edu/website/members/Members/RebeccaFry Rebecca Fry]<br>PDF of her lecture slides are [[Media:Dataanalysis2007 oct.pdf| here]]
|--
|--
| 2
| 2
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| Thur Nov 1  
| Thur Nov 1  
| [[Natalie Kuldell | NK]]
| [[Natalie Kuldell | NK]]
|  
| [[User:AliceLo| AL]]
|  
| Lecture on high throughput technologies;[[20.109(F07): Mod 2 Day 7| '''no lab''']]
|  
| First draft of your [[20.109(F07): Expression engineering report| expression engineering report]] is due by 5PM on the day you meet for lab.<br> PDF copy of lecture slides are [[Media:109(F07) M2D7handout.pdf| here]]
|--
|--
| 2
| 2
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| Tue Nov 6  
| Tue Nov 6  
| [[Natalie Kuldell | NK]]
| [[Natalie Kuldell | NK]]
|
| [[User:AliceLo| AL]]
|  
| [[20.109(F07): Module 2 oral presentations| Oral presentations]]
|  
| No lecture 11.06<br>Presentations will be in 56-302 for November 6th, <br>56-402 for November 7th
|--
|--
| colspan="7" |
| colspan="7" |
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| Thur Nov 8
| Thur Nov 8
| [[User:Abelcher| AB]]
| [[User:Abelcher| AB]]
|  
| [[User:Barbero| RB]]
|  
| [[20.109(F07): Growth of phage materials| Growth of phage materials]]
|  
|  
|--
|--
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| Tue Nov 13
| Tue Nov 13
| [[User:Abelcher| AB]]
| [[User:Abelcher| AB]]
|  
| [[User:Barbero| RB]]
|  
| [[20.109(F07): Phage nanowires| Phage nanowires]]
|  
| PDF copy of Atissa Bunuazizi's lecture is [[Media:Mod3 teampresentations.pdf| here]]
|--
|--
| 3
| 3
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| Thur Nov 15
| Thur Nov 15
| [[User:Abelcher| AB]]
| [[User:Abelcher| AB]]
|  
| [[User:Barbero| RB]]
|  
| [[20.109(F07): Transmission electron microscopy| TEM]]
|
| PDF copy of Yoon Sung Nam's lecture is [[Media:2007-11-15 20.109 lecture.pdf| here]]
|--
|--
| colspan="7" |
| colspan="7" |
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|
|
! colspan="4" | Thanksgiving Break Nov 22-33
! colspan="4" | Thanksgiving Break Nov 22-33
| '''No lab all week'''
| '''No lab or lecture all week'''
|--
|--
| colspan="7" |
| colspan="7" |
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| Tue Nov 27  
| Tue Nov 27  
| [[User:Abelcher| AB]]
| [[User:Abelcher| AB]]
|  
| [[User:Barbero| RB]]
|  
| [[20.109 (F07): Phage by design| Phage by design]]
|  
|  
|--
|--
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| Thur Nov 29
| Thur Nov 29
| [[User:Abelcher| AB]]
| [[User:Abelcher| AB]]
|  
| [[User:Barbero| RB]]
|  
| [[20.109(F07): Phage by design, pt2| Phage by design, pt 2]]
|  
|  
|--
|--
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| Tue Dec 4
| Tue Dec 4
| [[User:Abelcher| AB]]
| [[User:Abelcher| AB]]
|  
| [[User:Barbero| RB]]
|  
| [[20.109(F07): ECD assembly| ECD assembly]]
|  
|  
|--
|--
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| Thur Dec 6
| Thur Dec 6
| [[User:Abelcher| AB]]
| [[User:Abelcher| AB]]
|  
| [[User:Barbero| RB]]
|
| [[20.109(F07): Module 3 oral presentations| Oral presentations]]
|
| 56-302 on Thurs, December 6th <br> 56-402 on Friday, December 7th
|--
|--
| 3
| 3
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| Tue Dec 11
| Tue Dec 11
| [[User:Abelcher| AB]]
| [[User:Abelcher| AB]]
|
| [[User:Barbero| RB]]
|  
| end of term celebration...
|
| Lecture, no lab, for class evaluations then lunch from noon-1:30 PM, 32-G449
|}
|}
</div>
</div>

Latest revision as of 19:33, 1 December 2007


20.109(F07): Laboratory Fundamentals of Biological Engineering

Home        People        Schedule Fall 2007        Assignments        Lab Basics        OWW Basics       
Genome Engineering        Expression Engineering        Biomaterials Engineering              

MODULE DAY DATE LECTURER TA LAB note
Thur Sept 6 NK AL Orientation notes from the first lecture are here
1 1 Tue Sept 11 DE LAV Start-up genome engineering PDF copy of notes from discussion are here
1 2 Thur Sept 13 DE LAV Agarose gel electrophoresis PDF copy of notes from discussion are here
1 3 Tue Sept 18 DE LAV DNA ligation and bacterial transformation PDF copy of notes from discussion are here
1 4 Thur Sept 20 DE LAV Examine candidate clones PDF copy of slides from discussion are here
1 5 Tue Sept 25 DE LAV M13.1 PDF copy of slides from discussion are here (In lab we will hear from the oral presenation instructor)
1 6 Thur Sept 27 DE LAV Western analysis PDF copy of slides from discussion are here
1 7 Tue Oct 2 DE LAV Probe western the first draft of your genome engineering portfolio Parts 1, 2, and 4 only is due before you arrive in lab. During lab there will be a lecture from the EHS representative. PDF copy of slides from discussion are here.
1 8 Thur Oct 4 DE LAV Oral Presentations the first draft of your genome engineering portfolio Part 3 only is due before you arrive in lab.
Columbus Day Break Oct 8,9 No lab Tuesday and Wednesday
2 1 Thur Oct 11 NK AL siRNA design and start-up in cell culture PDF copy of lecture slides are here
2 2 Tue Oct 16 NK AL Transfection PDF copy of lecture slides are here
2 3 Thur Oct 18 NK AL Luciferase assays and RNA prep PDF copy of lecture slides are here
2 4 Tues Oct 23 NK AL Journal article discussion Guest lecture: NL from the writing program.
PDF of his slides are on his user page as well as here (overview) and

here (Guide to Scientific Writing)

2 5 Thur Oct 25 NK AL cDNA synthesis and microarray PDF copy of lecture slides are here
2 6 Tue Oct 30 NK AL Microarray data analysis guest lecture by Rebecca Fry
PDF of her lecture slides are here
2 7 Thur Nov 1 NK AL Lecture on high throughput technologies; no lab First draft of your expression engineering report is due by 5PM on the day you meet for lab.
PDF copy of lecture slides are here
2 8 Tue Nov 6 NK AL Oral presentations No lecture 11.06
Presentations will be in 56-302 for November 6th,
56-402 for November 7th
3 1 Thur Nov 8 AB RB Growth of phage materials
3 2 Tue Nov 13 AB RB Phage nanowires PDF copy of Atissa Bunuazizi's lecture is here
3 3 Thur Nov 15 AB RB TEM PDF copy of Yoon Sung Nam's lecture is here
Thanksgiving Break Nov 22-33 No lab or lecture all week
3 4 Tue Nov 27 AB RB Phage by design
3 5 Thur Nov 29 AB RB Phage by design, pt 2
3 6 Tue Dec 4 AB RB ECD assembly
3 7 Thur Dec 6 AB RB Oral presentations 56-302 on Thurs, December 6th
56-402 on Friday, December 7th
3 8 Tue Dec 11 AB RB end of term celebration... Lecture, no lab, for class evaluations then lunch from noon-1:30 PM, 32-G449
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