Index Seq ID Count Primer type Orientation Start Len tm GC% Any compl 3' compl Seq Prod size Seq len Included len Pair any compl Pair 3' compl Motif Motif Len SSR SSRLen 1 @GRC13_0019_FC:7:2:13565:9799#TTGT/1_@GRC13_0019_FC:7:2:13565:9799#TTGT/2 1 SSR FORWARD 17 19 52.95 47.37 2.00 1.00 CACCATCAACAGACAACAG 130 202 202 7.00 3.00 ACA 3 ACAACAACAACAACAACA 18 2 @GRC13_0019_FC:7:2:13565:9799#TTGT/1_@GRC13_0019_FC:7:2:13565:9799#TTGT/2 1 SSR REVERSE 146 19 54.21 42.11 4.00 3.00 TGCCATGTTGTAGTTGTCA 3 @GRC13_0019_FC:7:5:1787:4614#TTGT/1_@GRC13_0019_FC:7:5:1787:4614#TTGT/2 1 SSR FORWARD 37 19 53.82 36.84 3.00 3.00 AGTGTTGGCATTTCACAAT 109 202 202 5.00 0.00 TGT 3 TGTTGTTGTTGTTGTTGT 18 4 @GRC13_0019_FC:7:5:1787:4614#TTGT/1_@GRC13_0019_FC:7:5:1787:4614#TTGT/2 1 SSR REVERSE 145 19 55.07 47.37 6.00 3.00 CAACTTGTCCACAACAAGC 5 @GRC13_0019_FC:7:6:5272:5177#TTGT/1_@GRC13_0019_FC:7:6:5272:5177#TTGT/2 1 SSR FORWARD 38 19 55.32 47.37 4.00 1.00 TCCATGTTCTTGTGTACGG 114 202 202 4.00 0.00 CAT 3 CATCATCATCAT 12 6 @GRC13_0019_FC:7:6:5272:5177#TTGT/1_@GRC13_0019_FC:7:6:5272:5177#TTGT/2 1 SSR REVERSE 151 19 54.50 52.63 6.00 2.00 TAGCTAGGTGGTCCATGTG 7 @GRC13_0019_FC:7:8:12395:3791#TTGT/1_@GRC13_0019_FC:7:8:12395:3791#TTGT/2 1 SSR FORWARD 46 19 53.76 52.63 4.00 3.00 GTACTGGGGTAAGGACCAT 140 202 202 3.00 3.00 TGC 3 TGCTGCTGCTGCTGC 15 8 @GRC13_0019_FC:7:8:12395:3791#TTGT/1_@GRC13_0019_FC:7:8:12395:3791#TTGT/2 1 SSR REVERSE 185 19 54.10 42.11 6.00 2.00 AAGATCGTTGCTACATCCA 9 @GRC13_0019_FC:7:11:10533:3001#TTGT/1_@GRC13_0019_FC:7:11:10533:3001#TTGT/2 1 SSR FORWARD 37 19 53.61 47.37 3.00 3.00 CAAGAAGAAGAGGGTGACA 116 202 202 5.00 3.00 AAG 3 AAGAAGAAGAAG 12 10 @GRC13_0019_FC:7:11:10533:3001#TTGT/1_@GRC13_0019_FC:7:11:10533:3001#TTGT/2 1 SSR REVERSE 152 19 54.10 42.11 3.00 2.00 TTTTGCTGATTCTCTCTGC 11 @GRC13_0019_FC:7:20:7010:12916#TTGT/1_@GRC13_0019_FC:7:20:7010:12916#TTGT/2 1 SSR FORWARD 32 19 53.41 42.11 4.00 0.00 ACAGGTTATCCCCTCATTT 140 202 202 4.00 1.00 GAA 3 GAAGAAGAAGAA 12 12 @GRC13_0019_FC:7:20:7010:12916#TTGT/1_@GRC13_0019_FC:7:20:7010:12916#TTGT/2 1 SSR REVERSE 171 19 53.71 47.37 8.00 2.00 TGTGCACAATGGTGTAGAG 13 @GRC13_0019_FC:7:21:4439:8045#TTGT/1_@GRC13_0019_FC:7:21:4439:8045#TTGT/2 1 SSR FORWARD 40 19 54.40 52.63 2.00 0.00 CTTCCTCGTCAACCTCTCT 136 202 202 6.00 3.00 TCC 3 TCCTCCTCCTCC 12 14 @GRC13_0019_FC:7:21:4439:8045#TTGT/1_@GRC13_0019_FC:7:21:4439:8045#TTGT/2 1 SSR REVERSE 175 17 54.50 52.94 2.00 2.00 GAAGGGATGGGGAAGAT 15 @GRC13_0019_FC:7:27:15921:6944#TTGT/1_@GRC13_0019_FC:7:27:15921:6944#TTGT/2 1 SSR FORWARD 31 19 53.70 47.37 3.00 0.00 GACTTGCCCAGAAACTACA 128 202 202 3.00 1.00 CTT 3 CTTCTTCTTCTT 12 16 @GRC13_0019_FC:7:27:15921:6944#TTGT/1_@GRC13_0019_FC:7:27:15921:6944#TTGT/2 1 SSR REVERSE 158 19 54.09 47.37 4.00 0.00 GAAAAAGAGGAGGTCGAAG 17 @GRC13_0019_FC:7:32:15003:7126#TTGT/1_@GRC13_0019_FC:7:32:15003:7126#TTGT/2 1 SSR FORWARD 26 19 53.73 47.37 5.00 1.00 CACACCAAGAACTTCATCC 133 202 202 6.00 3.00 GCA 3 GCAGCAGCAGCA 12 18 @GRC13_0019_FC:7:32:15003:7126#TTGT/1_@GRC13_0019_FC:7:32:15003:7126#TTGT/2 1 SSR REVERSE 158 18 53.31 50.00 2.00 0.00 GGGATGACGCAGATACTT 19 @GRC13_0019_FC:7:35:17620:2719#TTGT/1_@GRC13_0019_FC:7:35:17620:2719#TTGT/2 1 SSR FORWARD 40 19 53.94 36.84 4.00 2.00 TTATTCCCATCTCATCGAA 138 202 202 5.00 2.00 CTT 3 CTTCTTCTTCTTCTTCTT 18 20 @GRC13_0019_FC:7:35:17620:2719#TTGT/1_@GRC13_0019_FC:7:35:17620:2719#TTGT/2 1 SSR REVERSE 177 19 53.78 42.11 6.00 2.00 AGCAGGATGAATTGCATAG 21 @GRC13_0019_FC:7:38:13092:15728#TTGT/1_@GRC13_0019_FC:7:38:13092:15728#TTGT/2 1 SSR FORWARD 16 19 53.90 47.37 4.00 2.00 CCTCGATGCTAGTAACCAA 136 202 202 3.00 1.00 AAG 3 AAGAAGAAGAAG 12 22 @GRC13_0019_FC:7:38:13092:15728#TTGT/1_@GRC13_0019_FC:7:38:13092:15728#TTGT/2 1 SSR REVERSE 151 19 54.06 36.84 8.00 2.00 GTTGATGGATCAATGGAAA 23 @GRC13_0019_FC:7:38:13092:15728#TTGT/1_@GRC13_0019_FC:7:38:13092:15728#TTGT/2 1 SSR FORWARD 16 19 53.90 47.37 4.00 2.00 CCTCGATGCTAGTAACCAA 136 202 202 3.00 1.00 GAA 3 GAAGAAGAAGAAGAAGAA 18 24 @GRC13_0019_FC:7:38:13092:15728#TTGT/1_@GRC13_0019_FC:7:38:13092:15728#TTGT/2 1 SSR REVERSE 151 19 54.06 36.84 8.00 2.00 GTTGATGGATCAATGGAAA 25 @GRC13_0019_FC:7:38:3901:19745#TTGT/1_@GRC13_0019_FC:7:38:3901:19745#TTGT/2 1 SSR FORWARD 55 19 54.05 52.63 4.00 3.00 GTGGTCTGAGCTTCTGATG 131 202 202 4.00 3.00 TGC 3 TGCTGCTGCTGCTGC 15 26 @GRC13_0019_FC:7:38:3901:19745#TTGT/1_@GRC13_0019_FC:7:38:3901:19745#TTGT/2 1 SSR REVERSE 185 19 54.10 42.11 6.00 2.00 AAGATCGTTGCTACATCCA 27 @GRC13_0019_FC:7:43:17530:20308#TTGT/1_@GRC13_0019_FC:7:43:17530:20308#TTGT/2 1 SSR FORWARD 4 18 54.44 61.11 2.00 0.00 GTAGGGGAGAAGGAGGTG 197 202 202 4.00 3.00 GGA 3 GGAGGAGGAGGAGGA 15 28 @GRC13_0019_FC:7:43:17530:20308#TTGT/1_@GRC13_0019_FC:7:43:17530:20308#TTGT/2 1 SSR REVERSE 200 18 54.20 50.00 5.00 0.00 CATCTGTGACAACCACCA 29 @GRC13_0019_FC:7:43:17530:20308#TTGT/1_@GRC13_0019_FC:7:43:17530:20308#TTGT/2 1 SSR FORWARD 29 18 54.01 55.56 2.00 0.00 AGGAGGAGGAGATGGAAG 172 202 202 5.00 2.00 GAG 3 GAGGAGGAGGAG 12 30 @GRC13_0019_FC:7:43:17530:20308#TTGT/1_@GRC13_0019_FC:7:43:17530:20308#TTGT/2 1 SSR REVERSE 200 18 54.20 50.00 5.00 0.00 CATCTGTGACAACCACCA 31 @GRC13_0019_FC:7:43:17530:20308#TTGT/1_@GRC13_0019_FC:7:43:17530:20308#TTGT/2 1 SSR FORWARD 29 18 54.01 55.56 2.00 0.00 AGGAGGAGGAGATGGAAG 172 202 202 5.00 2.00 GAG 3 GAGGAGGAGGAG 12 32 @GRC13_0019_FC:7:43:17530:20308#TTGT/1_@GRC13_0019_FC:7:43:17530:20308#TTGT/2 1 SSR REVERSE 200 18 54.20 50.00 5.00 0.00 CATCTGTGACAACCACCA 33 @GRC13_0019_FC:7:43:17530:20308#TTGT/1_@GRC13_0019_FC:7:43:17530:20308#TTGT/2 1 SSR FORWARD 29 18 54.01 55.56 2.00 0.00 AGGAGGAGGAGATGGAAG 172 202 202 5.00 2.00 AGG 3 AGGAGGAGGAGG 12 34 @GRC13_0019_FC:7:43:17530:20308#TTGT/1_@GRC13_0019_FC:7:43:17530:20308#TTGT/2 1 SSR REVERSE 200 18 54.20 50.00 5.00 0.00 CATCTGTGACAACCACCA 35 @GRC13_0019_FC:7:50:3466:12856#TTGT/1_@GRC13_0019_FC:7:50:3466:12856#TTGT/2 1 SSR FORWARD 33 18 53.77 44.44 7.00 3.00 AATGACATTGTGCAGCAG 131 202 202 6.00 2.00 ACA 3 ACAACAACAACA 12 36 @GRC13_0019_FC:7:50:3466:12856#TTGT/1_@GRC13_0019_FC:7:50:3466:12856#TTGT/2 1 SSR REVERSE 163 19 54.02 42.11 3.00 3.00 TGTCCCAATGTTTAGCACT 37 @GRC13_0019_FC:7:57:8893:17763#TTGT/1_@GRC13_0019_FC:7:57:8893:17763#CAGT/2 1 SSR FORWARD 6 19 54.41 42.11 6.00 0.00 TAAACTGGTTTTGGGTGTG 142 202 202 4.00 3.00 GAG 3 GAGGAGGAGGAGGAG 15 38 @GRC13_0019_FC:7:57:8893:17763#TTGT/1_@GRC13_0019_FC:7:57:8893:17763#CAGT/2 1 SSR REVERSE 147 19 53.24 52.63 3.00 0.00 TACAAGTCTCCTCCACCAC 39 @GRC13_0019_FC:7:57:8893:17763#TTGT/1_@GRC13_0019_FC:7:57:8893:17763#CAGT/2 1 SSR FORWARD 53 20 53.79 50.00 4.00 0.00 GTAAACATGAGGAGGAGGAG 149 202 202 4.00 2.00 GAG 3 GAGGAGGAGGAGGAGGAGGAG 21 40 @GRC13_0019_FC:7:57:8893:17763#TTGT/1_@GRC13_0019_FC:7:57:8893:17763#CAGT/2 1 SSR REVERSE 201 22 52.69 40.91 4.00 2.00 CTCCCACCATATAAGTACAAGT 41 @GRC13_0019_FC:7:58:1925:3966#TTGT/1_@GRC13_0019_FC:7:58:1925:3966#TTGT/2 1 SSR FORWARD 58 19 54.21 36.84 4.00 2.00 TTTCCTTTCATGCCTCATA 110 202 202 3.00 1.00 GAA 3 GAAGAAGAAGAAGAA 15 42 @GRC13_0019_FC:7:58:1925:3966#TTGT/1_@GRC13_0019_FC:7:58:1925:3966#TTGT/2 1 SSR REVERSE 167 19 54.64 47.37 5.00 1.00 TCAGCCAATGGTTCAGTAG 43 @GRC13_0019_FC:7:61:8537:19921#TTGT/1_@GRC13_0019_FC:7:61:8537:19921#TTGT/2 1 SSR FORWARD 46 18 53.85 55.56 4.00 2.00 GGCAAGGTGATCTAGGTG 107 202 202 3.00 0.00 CAT 3 CATCATCATCAT 12 44 @GRC13_0019_FC:7:61:8537:19921#TTGT/1_@GRC13_0019_FC:7:61:8537:19921#TTGT/2 1 SSR REVERSE 152 19 53.99 42.11 4.00 0.00 CATGTTGGCATTTATAGGG 45 @GRC13_0019_FC:7:71:15021:1137#TTGT/1_@GRC13_0019_FC:7:71:15021:1137#TTTA/2 1 SSR FORWARD 36 19 54.04 42.11 4.00 2.00 CTGGGGTTAAAATGGATCT 138 202 202 5.00 0.00 TTA 3 TTATTATTATTATTA 15 46 @GRC13_0019_FC:7:71:15021:1137#TTGT/1_@GRC13_0019_FC:7:71:15021:1137#TTTA/2 1 SSR REVERSE 173 25 53.93 32.00 4.00 0.00 TGTTTCTCTCATGTATTAACTCTTC 47 @GRC13_0019_FC:7:73:2984:10185#TTGT/1_@GRC13_0019_FC:7:73:2984:10185#TTTT/2 1 SSR FORWARD 23 19 54.20 52.63 3.00 0.00 GGATACTTGGCTCCTCTGT 140 202 202 4.00 2.00 TGT 3 TGTTGTTGTTGT 12 48 @GRC13_0019_FC:7:73:2984:10185#TTGT/1_@GRC13_0019_FC:7:73:2984:10185#TTTT/2 1 SSR REVERSE 162 19 53.64 57.89 5.00 3.00 CCTCCAACCCCTAGACTAC 49 @GRC13_0019_FC:7:78:10785:19904#TTGT/1_@GRC13_0019_FC:7:78:10785:19904#TTGT/2 1 SSR FORWARD 57 17 54.22 52.94 4.00 3.00 CAGAGTTGGCGACATTG 117 202 202 4.00 2.00 GCA 3 GCAGCAGCAGCA 12 50 @GRC13_0019_FC:7:78:10785:19904#TTGT/1_@GRC13_0019_FC:7:78:10785:19904#TTGT/2 1 SSR REVERSE 173 19 54.05 42.11 4.00 1.00 TAACATTGCATCTGTGCTG 51 @GRC13_0019_FC:7:78:19042:20523#TTGT/1_@GRC13_0019_FC:7:78:19042:20523#TTGT/2 1 SSR FORWARD 25 23 53.79 30.43 5.00 2.00 GACATTGAAACTCAACTAATCAA 155 202 202 5.00 1.00 TTA 3 TTATTATTATTATTA 15 52 @GRC13_0019_FC:7:78:19042:20523#TTGT/1_@GRC13_0019_FC:7:78:19042:20523#TTGT/2 1 SSR REVERSE 179 19 54.26 42.11 6.00 0.00 TTCAAGAGCCCTTCTTTCT 53 @GRC13_0019_FC:7:90:8622:12303#TTGT/1_@GRC13_0019_FC:7:90:8622:12303#TTGT/2 1 SSR FORWARD 44 20 54.36 40.00 4.00 2.00 CATCAAAGCTATCAACATCG 130 202 202 5.00 2.00 TCA 3 TCATCATCATCA 12 54 @GRC13_0019_FC:7:90:8622:12303#TTGT/1_@GRC13_0019_FC:7:90:8622:12303#TTGT/2 1 SSR REVERSE 173 20 53.21 35.00 6.00 0.00 GCATAAATGGTTATGTTTGG 55 @GRC13_0019_FC:7:98:6206:9696#TTGT/1_@GRC13_0019_FC:7:98:6206:9696#TTGT/2 1 SSR FORWARD 55 19 53.88 42.11 5.00 0.00 CGAATTGGAACACTTCATC 121 202 202 4.00 3.00 TCC 3 TCCTCCTCCTCCTCC 15 56 @GRC13_0019_FC:7:98:6206:9696#TTGT/1_@GRC13_0019_FC:7:98:6206:9696#TTGT/2 1 SSR REVERSE 175 19 53.38 47.37 4.00 2.00 GTCGCTTTCTTACATGAGG 57 @GRC13_0019_FC:7:101:10370:8173#TTGT/1_@GRC13_0019_FC:7:101:10370:8173#TTGT/2 1 SSR FORWARD 36 19 54.13 47.37 2.00 1.00 CACCATCTTCTTCGTTCAG 137 202 202 3.00 1.00 GAA 3 GAAGAAGAAGAAGAA 15 58 @GRC13_0019_FC:7:101:10370:8173#TTGT/1_@GRC13_0019_FC:7:101:10370:8173#TTGT/2 1 SSR REVERSE 172 19 54.54 52.63 8.00 1.00 CCCTCGCTTAGCTAACTTC 59 @GRC13_0019_FC:7:112:13631:5631#TGTA/1_@GRC13_0019_FC:7:112:13631:5631#TTGT/2 1 SSR FORWARD 41 17 54.05 52.94 4.00 1.00 AGGCTTCCACAAGCAGT 127 202 202 5.00 3.00 GAA 3 GAAGAAGAAGAA 12 60 @GRC13_0019_FC:7:112:13631:5631#TGTA/1_@GRC13_0019_FC:7:112:13631:5631#TTGT/2 1 SSR REVERSE 167 18 54.00 50.00 4.00 1.00 CTGAAGCTGCCAAACTCT 61 @GRC13_0019_FC:7:118:11526:9340#TTGT/1_@GRC13_0019_FC:7:118:11526:9340#TTGT/2 1 SSR FORWARD 46 19 54.22 42.11 4.00 0.00 AAGGAACCAATTCCAAGAG 130 202 202 6.00 3.00 GAA 3 GAAGAAGAAGAA 12 62 @GRC13_0019_FC:7:118:11526:9340#TTGT/1_@GRC13_0019_FC:7:118:11526:9340#TTGT/2 1 SSR REVERSE 175 19 53.30 42.11 2.00 2.00 GGTGATTTGGTAGTTGGAA