Links for Bioremediation Project

Protein Surface Display

 * 1) Wernerus04 pmid=15035661

OmpX

 * 1) Mecsas95 pmid=7836315
 * 2) OmpX http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&id=559693

CPX

 * Total length is 558 bp + length of passenger peptide
 * 1) Native SS - 69 bp MKKIACLSALAAVLAFTAGTSVA
 * 2) Embedded SfiI restriction site - 15 bp GQSGQ
 * 3) Passenger Peptide XXXXXXXXXXXXXX
 * 4) Sequence - 18 bp GGQSGQ
 * 5) S54-F148 - 285 bp SGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF
 * 6) Join native C and N - 12 bp GGSG
 * 7) A1-S53 - 159 bp ATSTVTGGYAQSDAQGQMNKMGGFNLKYRYEEDNSPLGVIGSFTYTEKSRTAS

OmpC

 * 1) Xu99 pmid=10543834
 * 2) OmpC http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&id=15832358 OmpC Sequence

Kenan

 * Strong Binders	>150
 * 17	FFPSSWYSHLGVL
 * 18	FFSFFFPASAWGS

Menendez
-
 * YTGWETWYSFDPFTHYGGPGSRFDFVHDKSEDPIDRSY	 Adey95
 * QDLDHWSYWSMYSTYPTSPGLVPYSWGYGSPNSHTDKL
 * PWWWVSWVDAGGGSLALPTQPSD
 * WGWPTWWGWTGGDARHPSAPEAH
 * WWDPDIWFGWGGAHPPNLIQPIS
 * GWQSGWEWWIGGGNWTSNTTH
 * IYYPFFVWGNYANGGLLSPGHVYSSNFIPLYMQREVSP
 * SSRLAYDHYFPSWRSYIFPGSNSSYYNNSWPTITMETN
 * RPYLYDPNEWHRYYSYLLPGHSYNVQSWPDGLGKSASR
 * LGFSGWYWQGLYGLGSHDPGFIHEQSPAEVAMEDTEQS
 * QTLIDFHDLHYWGAYYGWPGIYDAESGSQAVRHNMTHT
 * DSWPLRIYSGLSNYYHYFPGSLVYNMMYPSLSRLPKGD
 * HHGAMNRYYTWLWDNSRFPGRSYLLSAPATQPEASISQ
 * TYDYTYDWSGLFWSPFTHPGAHMTTHSPWAGHKPHAET
 * EIHGNLYNWSPLLGYSYFPGISPKHISGEVPPRPSTKV
 * PYWMFYGFDWRGGFPPSHQIMDQ
 * WMQSWYYHWGGGETFPIRRDSGG
 * SRTWVLWIRY   Gebhart96
 * LSAWARWGSS
 * SRGFWLVWEQ
 * TWTLWFASMS
 * VDWVGWGASW
 * WVEWRRGWLS
 * PWNAWGRTWV
 * GGWAMWGRVW
 * WMRWGRSWGR
 * GSWKEWGGAW
 * SAWVRWGRVW
 * WSAWVGDWAL
 * GVIHWRAWGGDW
 * LNWRGGWNWF
 * WRLGFARWIG
 * WGYVFHGWNL
 * CCWGYGGSLV
 * VYRVIWFVGR
 * FHAFHAWSAA
 * GSVWWQAHVDR
 * LWGGLYGIWM
 * MWGMHWAEGW
 * FLPYARWFSR
 * VIYYFLVMFM
 * VCFVMFSMCR
 * RPVAGDHPGS

- - -
 * FHENWPS
 * FHWTWYW
 * WHRWPWLVSG
 * WHWWYWALDR
 * APFYYSWFPSYMAEGLPSPSPLDPVQDNLY


 * Notes:
 * Fixed residues at the N and C terminus of the peptides are not shown, fixed amino acids within the sequences are double-underlined.
 * Unpublished results, plate binding confirmed by ELISA.

Polypyrrole
T59: THRTSTLDYFVI Sanhvi05


 * 1) Sanhvi05 pmid=15895095

Toxicity of Heavy Metals

 * 1) Silver05 pmid=16133099

Cadmium

 * Summary: Cd causes damage to cells primarily by the generation of reactive oxygen species (ROS), which causes single-strand DNA damage and disrupts the synthesis of nucleic acids and proteins. Cd is also an inhibitor of the DNA mismatch repair system…Results of this study confirmed that Cd toxicity caused profound changes in gene expression in which several stress response systems were induced simultaneously.


 * 1) Wang95 pmid=3104315

Heavy Metal Resistance Techniques

 * 1) Bruins00 pmid=10702338
 * 2) Hou88 pmid=3056525

Heavy Metal Binding Proteins/Peptides

 * 1) Samuelson00 pmid=10698802
 * 2) Biosorbants pmid=9758845
 * 3) Kotrba99 pmid=10049868
 * 4) Mejare01 pmid=11164556
 * 5) Lu01 pmid=11710062
 * 6) Bae00 pmid=11042548

Pumps

 * Cadmium(Plasmid pI258 (from S.aureus) cadmium resistance (cadA) gene, complete cds) Wang95
 * ZntA(Divalent Metal Transporter)
 * 1) Dutta07 pmid=17326661
 * 2) Okkeri06 pmid=16890908
 * 3) Hou03 pmid=12746428
 * 4) Sharma00 pmid=10660539

Promoters
Yao06
 * Cadmium(pCN39, a derivative of pCN37 with a temperature-sensitive replicon)
 * Mercury (Pmer)
 * 1) Condee92 pmid=1334070
 * 2) Gambill85 pmid=4092936
 * 3) Yao06 pmid=16741231
 * 4) Hansen00 pmid=11094290

Sponges

 * Mercury

Miscellaneous

 * Arabinose PBAD Promoter pBAD33
 * 1) pBAD33 pmid=7608087

Outer Membrane Proteins

 * OmpA, OmpB, OmpC Surface proteins koebnik00
 * 1) koebnik00 pmid=10931321

Review articles

 * 1) Paul05 pmid=15734556
 * 2) Valls02 pmid=12413663

Other Bacteria

 * 1) Mergeay03 pmid=12829276
 * 2) Mizuno07 pmid=17475501
 * 3) Mehta05 pmid=16294830
 * 4) Munoz06 pmid=16307789
 * 5) USGS http://water.usgs.gov/wid/html/bioremed.html

Phytoremediation
092247
 * 1) Yang05 pmid=16028496
 * 2) Kamnev00 pmid=11

Heavy Metal Absorption in Plants and Soil

 * 1) DeMarco04 pmid=15109722
 * 2) Vivas03 pmid=14663492
 * 3) Clemes02 pmid=12119168
 * 4) Tripathi07 pmid=17306392

Heavy Metal Resistance

 * 1) Nakajima95 pmid=7793951

Biosensors

 * 1) Paul05 pmid=15734556
 * Using overexpression and purification of proteins for biosensor
 * 1) Bontidean98 http://pubs.acs.org/cgi-bin/article.cgi/ancham/1998/70/i19/html/ac9803636.html

Absorption of Heavy Metals

 * 1) Gutnick00 pmid=11092618
 * 2) Tripathi07 pmid=17306392ick00 pmid=11092618
 * 3) Weinberg89 pmid=2530602