User:Tk/Notebook/MF/2008/08/12

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 * style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]] Mesoplasma florum simplification
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 * style="background-color: #F2F2F2" align="center"|  |Main Page


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Tandem repeats

 * Tandem Repeats Finder


 * Poly T and Poly A tracts upstream of switchable genes
 * 044577-92 poly T, upstream of mfl033 ->
 * 284203-18 poly T, upstream of mfl 255/256 ->
 * 437602-18 poly A, upstream of mfl377 <-
 * 523044-59 poly A, upstream of mfl44 <-
 * 529275-90 poly A, middle of unclear gap
 * 533892-907 poly A, upstream of mfl451, slpA
 * 548682-97 poly A, upstream of mfl462, natA


 * Three bp repeats
 * 528051-82 poly TAT, middle of gene


 * Five bp repeats
 * AAATG 3.2x 335951-66
 * ATTTA 3x 507534-48
 * ATTTG 4.2x 548628-47
 * ATTTG 3x 640417-31


 * Six bp repeats
 * AAAGCA 3.3x 091095-114
 * AAAGCA 3.3x 092536-55
 * ATACGA 5.3x 292617-48
 * ATACCA 3.2x 483387-405


 * 7 bp repeats
 * CTTTTTT 3x 141321-141342


 * 9 bp repeat
 * CTTTTTTTG 2.8x 537640-64
 * TAGAAATAC 2.9x 577824-49


 * 15 bp repeats
 * ATAATTGCTCCTAAG 2.3x 404997-405030
 * ACTTTAGCTTCTTCA 2.3x 778871-905
 * TTTTTTAGCTACCGG 2.6x 778963-9001
 * TTTTTTAGCTACCGG 2.6x 779023-61
 * ACTTTAACTTCTTCA 3.3x 779065-115
 * entire region from 778734-779115 is full of 15/30 bp repeats


 * 18 bp repeats
 * ATTGAAAAACAAATTGAA 2.1x 704657-93
 * TTCAATTAAAATTGTTGT 2.1x 717831-66


 * 21 bp repeat
 * CCAACTCCACCAAGTATTCCA 3.6x 506976-7051


 * 24 bp repeat
 * CGACCTGAATCTCTTCTATCTTCA 3.1x 617242-315


 * 30/60 bp repeat
 * 616790-949


 * Long repeats
 * 186 bp repeat (5.7x) 524957-6017
 * 216 bp repeat (3.4x) 403220-403954
 * 333 bp repeat (1.9x) 411116-744
 * 261 bp repeat (10x) in mfl444 gene, 518593-521201
 * 566 bp repeat (2.2x) 524958-6203
 * 264 bp repeat (2.0x) 525699-6228
 * 265 bp repeat (2.2x) 525727-6299
 * 135 bp repeat (2.2x) 778734-9025


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