Ryan N. Willhite Week 12


 * [[Media:Saureus_import_all.txt | S. aureus data ready for import into GenMAPP]]

Normalize Ratios

 * 1) Add rows
 * 2) Type Equations
 * =AVERAGE
 * =STDEV
 * 1) Insert columns and input equation
 * (cell 4-average)/Stdev)
 * Scaling and centering
 * =(B4-$B$2)/$B$3



Perform Statistical Analysis on the ratios

 * Average log fold change for replicates
 * =AVERAGE(B2:E2)


 * Make columns "Avg_LogFC_all"

=AVERAGE (N2:P2)/ STDEV (N2:P2)/SQRT (#of replicates)
 * New column "Tstat"- T statistic

TDIST(ABSCR2), (degrees of freedom, 2)
 * New column "Pvalue."
 * degree of freedom= #of replicates-1