Harvard:Biophysics 101/2007/Notebook:Resmi Charalel/2007-4-5

OMIM to Review Articles in Pubmed

 * The following is the code to return a list of review references for the disease returned through Xiaodi's code.

from Bio import PubMed from Bio import Medline import string

disease = a.name

search_term = "Review[ptyp] "+disease
 * 1) print search_term

review_ids = PubMed.search_for(search_term)

rec_parser = Medline.RecordParser medline_dict = PubMed.Dictionary(parser = rec_parser)

count = 1

for did in review_ids[0:5]: cur_record = medline_dict[did] print '\n', count, ') ', string.rstrip(cur_record.title), cur_record.authors, string.strip(cur_record.source)    count=count+1