User:Shameer Khadar

Contact Info


Shameer Khadar Senior Research Fellow The Computational Biology Group National Centre for Biological Science, Tata Institute of Fundamental Research, Bangalore - India +91 9986009148 / shameer@ncbs.res.in / skhadar@gmail.com I work in Prof. R. Sowdhamini's Lab at National Centre for Biological Science, Bangalore, India. I am working in the field of Bioinformatics, my interest are in analysis and extraction of biological meaning from exponentialy growing experimental data. I am also working at Dr. B. Gopal's Laboratory, Molecular Biophysics Unit, Indian Institute of Science, Bangalore, India. I will be writing about my research interests in this OpenWetWare pages.
 * Email me through OpenWetWare

Education

 * 2005 - till date, Senior Research Fellow in Prof. R. Sowdhamini's Lab, National Centre for Biological Sciences, TIFR, Bangalore - India
 * 2004, MSc in Bioinformatics, Mahatma Gandhi University, Kerala - India
 * 2002, BSc in Physics Major (with Chemistry and Mathematics), Calicut University, Kerala - India

Research interests

 * 1) Genome Informatics
 * 2) Structural Bioinformatics
 * 3) Open Source (Bioinformatics) Programming / Web 2.0 Technologies
 * 4) Machine Learning in Bioinformatics
 * 5) Bioinformatics Database & Servers Development

Publications
Bernard and R Sowdhamini (2007)  [Nature Protocols DOI : 10.1038/nprot.2007.486] Acids Research 34: 143-146
 * PURE: A web server for querying the relationship between Pre-existing domains and Unassigned Regions in proteins. CC Sekhar Reddy, K Shameer, O
 * HARMONY: a server for the assessment of protein structures. G. Pugalenthi., K Shameer., N. Srinivasan., and R. Sowdhamini. (2006) Nucleic
 * IWS: Integrated Web Server for protein sequence and structure analysis. K Shameer & R Sowdhamini (2007) Bioinformation2(3): 86-90
 * Hypothetical Protein-Protein Interaction Pathway of FANC core complex based on motif Analysis. K. Shameer et. al ;( 2005) Bioinformatics Trends, 4, 112-119
 * Gene^Scape – Web based Multiple gene-mapping tool for Mus Musculus. K Shameer et. al; (2005) Bioinformatics Trends, 3, 4, 140-142.
 * Protein * Quest – A web based cross-reference protein information resource. Shameer K et. al; (2004) Bioinformatics Trends, 2, 3, 47 - 52.


 * More to come soon...

Useful links

 * [Teach Yourself Programming in 10 years http://www.norvig.com/21-days.html]
 * My Blog at OpenWetWare
 * My Bioinformatics Blog
 * My Personal Blog