User:TheLarry/Notebook/Larrys Notebook/2009/07/01

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Back to SDM
It is time for me to implement cross correlation into the comparing shit i do. and all that jazz.

Note: Koch wants to add a shift [Cross Correlation] and a stretch [unknown but koch said a multiplying factor may do this. i'll work on it after cross correlating].

Using primarily three pages from wang lab to see me through it.
 * 1) Shundrovsky 2006 "Probing SWI/SNF remodeling of the nucleosome by unzipping single DNA molecules"
 * 2) Deufel 2006 "Detection of Forces and Displacements along the axial direction in an optical trap"
 * 3) Hall 2009 "High-resolution dynamic mapping of histone-DNA interactions in a nucleosome"

Cross correlation looks easy. I just gotta write a .vi to run this formula.

The Hall paper mentions a way they compare graphs from Orear "NOTES ON STATISTICS FOR PHYSICISTS, REVISED." When I am done with this; this paper may be worth looking through to improve my match score.

OK i wrote my first cross correlating .vi