Van Oudenaarden Lab:C10G8.6

Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

>C10G8.6 (ceh-34 spliced coding region)

acattcactgggggacgacaagaggacgacgctctcggctcacagcaccactcaccacctactctctttttgtcagctcc taccggcgccggatcgacggatcttttaggatcacgtcttctgtgatctggctcatcgaac

atgcagcagtcatataacccgcaaaatagtctgacagcaaccacatcctactcggagcaagaaattgtgtgtatttgtga gtccttattcaacgagggacttcagacaggacggactgagcaattggccaatttcatctacaaccttccacaatgctacc aagtaatggaatcagttttaaaagcacaagctcttgtgtattttacaacacaaaactggaagatgctctacaagttactg gaatgcagcaagttttccccacataatcacacagttctacaaaatttgtggcttgatgcacattataaagaggctgcgaa aacaaaggatcgggagctaggagcggtttgcaaataccggatccgaaagaagaacccatttccaaacacaatttgggatg gagaagagacaaattattgctttaagtcgaaatctcgaaatgttcttcgggatgcttacaagaaatgccagtacccatca gtagaagataaaagacgattagctcaacaaactgaattatcaattattcaagtgtccaactggttcaaaaacaagaggca acgtgagagggcagctggtcaactcgatagaagctccgccagatccaacgacagtgacgatggatcatctggctgtgaat caaaacctccgatgaatattgacagccctgcgcctccgccattaccaacttcatttgatctacaaccctattatccatca ccttacacatttgctccacattgtgacttttcatacattcagaatttgtga

tgactgcttttccccctcaagaccattagaataact tttaactatatttttgacataccttccctgccatttcaagtactctaactcatcggttcttccaaacttcagttttctcc caaagacagtattttttgatattcataatacaaaatatctttaatcaataaattatatttttttt

Name of probe set: ceh-34

Probes designed on Mon, 01 Mar 10 12:59:17 -0700

48 probes designed for target of length 1093

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

tgtcgtcccccagtgaatgt, ceh-34_1, 1, 1, 55

tgagccgagagcgtcgtcct, ceh-34_2, 2, 23, 65

gagtaggtggtgagtggtgc, ceh-34_3, 3, 45, 60

ccggtaggagctgacaaaaa, ceh-34_4, 4, 67, 50

taaaagatccgtcgatccgg, ceh-34_5, 5, 89, 50

cagatcacagaagacgtgat, ceh-34_6, 6, 111, 45

gactgctgcatgttcgatga, ceh-34_7, 7, 133, 50

cagactattttgcgggttat, ceh-34_8, 8, 155, 40

ccgagtaggatgtggttgct, ceh-34_9, 9, 177, 55

caaatacacacaatttcttg, ceh-34_10, 10, 199, 30

tccctcgttgaataaggact, ceh-34_11, 11, 221, 45

gctcagtccgtcctgtctga, ceh-34_12, 12, 243, 60

ttgtagatgaaattggccaa, ceh-34_13, 13, 265, 35

tacttggtagcattgtggaa, ceh-34_14, 14, 287, 40

gtgcttttaaaactgattcc, ceh-34_15, 15, 309, 35

gttgtaaaatacacaagagc, ceh-34_16, 16, 331, 35

gtagagcatcttccagtttt, ceh-34_17, 17, 353, 40

acttgctgcattccagtaac, ceh-34_18, 18, 375, 45

actgtgtgattatgtgggga, ceh-34_19, 19, 397, 45

atcaagccacaaattttgta, ceh-34_20, 20, 419, 30

tcgcagcctctttataatgt, ceh-34_21, 21, 441, 40

cctagctcccgatcctttgt, ceh-34_22, 22, 463, 55

gatccggtatttgcaaaccg, ceh-34_23, 23, 485, 50

ttggaaatgggttcttcttt, ceh-34_24, 24, 507, 35

tcttctccatcccaaattgt, ceh-34_25, 25, 529, 40

cgacttaaagcaataatttg, ceh-34_26, 26, 551, 30

cccgaagaacatttcgagat, ceh-34_27, 27, 573, 45

tactggcatttcttgtaagc, ceh-34_28, 28, 595, 40

tcttttatcttctactgatg, ceh-34_29, 29, 617, 30

attcagtttgttgagctaat, ceh-34_30, 30, 639, 30

gttggacacttgaataattg, ceh-34_31, 31, 662, 35

gttgcctcttgtttttgaac, ceh-34_32, 32, 684, 40

agttgaccagctgccctctc, ceh-34_33, 33, 706, 60

ggatctggcggagcttctat, ceh-34_34, 34, 728, 55

atgatccatcgtcactgtcg, ceh-34_35, 35, 750, 50

ggaggttttgattcacagcc, ceh-34_36, 36, 772, 50

cgcagggctgtcaatattca, ceh-34_37, 37, 794, 50

atgaagttggtaatggcgga, ceh-34_38, 38, 816, 45

ggataatagggttgtagatc, ceh-34_39, 39, 838, 40

tggagcaaatgtgtaaggtg, ceh-34_40, 40, 860, 45

ctgaatgtatgaaaagtcac, ceh-34_41, 41, 884, 35

ggaaaagcagtcatcacaaa, ceh-34_42, 42, 906, 40

gttattctaatggtcttgag, ceh-34_43, 43, 928, 35

gggaaggtatgtcaaaaata, ceh-34_44, 44, 957, 35

agttagagtacttgaaatgg, ceh-34_45, 45, 979, 35

ctgaagtttggaagaaccga, ceh-34_46, 46, 1001, 45

aaatactgtctttgggagaa, ceh-34_47, 47, 1023, 35

attttgtattatgaatatca, ceh-34_48, 48, 1045, 15