User:Lindenb/Notebook/UMR915/20101015

Testing Varscan for our data
for I in 1.... do 	for PROG in pileup2snp pileup2indel do echo "prog:${PROG} indi:${I}" samtools-0.1.7a/samtools pileup \ -f hg18.fa \ recal_bwa_rmdup_XXXX${I}.bam |\ java -jar VarScan.v2.2.jar ${PROG} | gzip > varscan_${PROG}_${I}.tsv.gz 	done done

Meeting
shown how to use mediawiki.

Balsamiq
testing balsamiq http://www.balsamiq.com/builds/mockups-web-demo/