User:Ilya/Notes/Software

Data visualization

 * Many Eyes - a site for sharing and commenting on visualizations by IBM
 * Data360
 * Swivel: YouTube for data - visualize and share your data with others
 * Gapminder
 * Processing is an open source programming language and environment for people who want to program images, animation, and interactions
 * Visualizing Data - O'Reilly book

Application servers
Whitebeam - open source; applications are written as a set of XML pages that contain embedded JavaScript

Project management

 * Planner is the GNOME project management tool
 * Eventum - web-based issue tracking system developed by MySQL

Network

 * EtherApe - a graphical network monitor
 * Wireshark: network protocol analyzer (successor to Ethereal)
 * Tor: an anonymous Internet communication system

Cross platform

 * JabRef is an open source bibliography reference manager

Linux

 * BibTeX
 * Pybliographer
 * Referencer is a Gnome application to organise documents or references, and ultimately generate a BibTeX bibliography file.

OS X

 * BibDesk
 * iPapers - PDF manager
 * Papers

Miscellaneous

 * Biotool2Web: Creating Simple Web Interfaces for Bioinformatics Applications
 * Sedna is an open source XML-native database management system developed from scratch in C/C++ and Scheme
 * Aggregate Data utilizes AJAX-based "sliders" so survey takers can choose anywhere along a spectrum of opinion
 * CHM file viewers for non-Windows platforms
 * GnoCHM
 * xchm
 * Chmox - a Mac OS X CHM viewer
 * Babel - convert between various formats (Excel, JSON, N3, RDF/XML, etc)