User:Lindenb/Notebook/UMR915/20101014


 * presentation Quentin
 * improving sigframe
 * asked snapshot from Integragen/Melanie

From http://biostar.stackexchange.com/questions/2903, Brad Chapmans suggest http://bioinformatics.bc.edu/marthlab/GigaBayes as a SNP caller.

Belgium
Downloaded  http://www.clcbio.com/index.php?id=1292 to get visible data for individual 1

Coverages
Individual 1:

Mean coverage                         18,93 Total bases in targeted regions   3.456.979 1x                                  90,60% 5x                                  68,09% 10x                                 49,68% 20x                                 33,75% 40x                                 16,28% 80x                                  0,76% 100x                                 0,07%

Individual 2:

primary_target_region coverage report.pdf

Mean coverage                         34,81 Total bases in targeted regions   3.456.979 1x                                  96,76% 5x                                  88,27% 10x                                 73,18% 20x                                 51,10% 40x                                 33,79% 80x                                 12,34% 100x                                 4,28%

capture_target coverage report.pdf

Mean coverage                      27,67 Total bases in targeted regions 5.085.943 1x                               92,46% 5x                               79,76% 10x                              63,03% 20x                              41,00% 40x                              24,52% 80x                               8,54% 100x                              2,95%