Wikiomics:BLAST tutorial (exercises)

>Shuffled_protein MNALFNGRYVRQNLRFAGFARVDRERPPLTWFQVSAIPLFARGFAGAIDSSRISRSGEAF VGCVCLAQPCFVGAADGEADLRAGVGSVTVAVNGSLLLFALG
 * blastp with shuffled sequence: note that all hits must be wrong!

>nucleotide_1 ATATAGTTTTTAATTAGGAGGATTTTATCAATGAAAATATCAATACTATACAGTAGCAAGACAGGAAAAA CCGAAAGAGTTGCCAAGTTAATTGAAGAAGGTGTGAAGAGGTCTGGAAATATTGAAGTAAAAACTATGAA TTTAGATGCAGTTGATAAAAAGTTCTTACAAGAATCAGAAGGAATTATTTTTGGAACACCAACTTATTAT
 * what is this nucleotide sequence?

>nucleotide_2 ATATAGTATTTAATTAGGAGGATTTCATCAATGACACTCTCAATACTATACAGTAGCAAG ACAGGGAAAACAGAAAGAGTTGCCAAGGTAATTGAGGAAGGTGTGAAGAGGTCTCAAAAT AATGAAGTAAGAACTGTGAATCTAGATGCAGTTCATAATAAGTTCTTCGAAGAATCAGGA GGCATTCTTTTTGGAACACCAACTTATGAT
 * same sequence mutated:

>protein_1 HIGSDTDGDDDSETEGEWNLKEGGSIDAELSHSRKAKKVESLLRKLHTKDILPEEVSS GSHLHTRSPMVLFLSLAVPTDKVVMFYKALFTEAELKAPLESLKRFQNNGDARTGKSA IFMLGGGHFAGAVISHEPVKVKGQLLNEELPYLQKIQSINVLESKTFHRYTTRRKQGG
 * what is it? Any remote similarity?


 * play with your favorite gene/protein