Endy:PiP

This page is for keeping track of the status of papers in the Endy writing queue.

Barry #1 : Model-based forward engineering of autocatalytic, self-regulating, and orthogonal gene expression systems in Escherichia coli

 * Authors: Barry, Drew
 * Status: Drew drafting for PNAS
 * Writing: On Google Docs
 * Project page & Paper page.
 * Goal : Submit June 2009

Jason #2 : Programmed selection and preferential promotion of microbes using a selectostat

 * Authors: JK & DE
 * Status: Endy drafting for PNAS
 * Main Text on Google Docs
 * Figures
 * Supplement
 * OWW Page
 * Goal : Submit June 2009

Reshma #1 : Using genetically encoded odorant reporters to engineer bacteria that smell like wintergreen and banana

 * Authors: RS & DE
 * Status: reviews received, revision complete, sent to RC3 for his comments
 * Goal : submitted

Reshma #2 : Signal levels, load, and error rates in engineered transcriptional devices

 * Authors: RS & DE
 * Status: RS working on figures
 * Goal : Submit by end of August

Samantha #1 : Controlling cellular location by engineering phosphorylation

 * Authors: SS & DE
 * Status: In review at PLoS Biology
 * Goal : Have in press in 2008

Samantha #2 : Signals and specifications for a family of phosphorylation-dependent devices, or equivalent

 * Authors: SS & DE
 * Status: Outline and structure finalized, SS leading writing
 * Goal : Submit by end of August

Ty #1 : Tools for making systems biology models more scientific

 * Authors: TT, DE
 * Status: DE to do final edit, send to RB and TT for final approval
 * Goal : Submit by end of August

Ty #2 : Scaffold number in yeast signaling system sets tradeoff between system output and dynamic range

 * Authors: TT, DE
 * Status: Submitted to MSB
 * Goal : Get published ASAP.

Ty #3 : Mechanics, Controls, and Modeling of Mating Pheromone-Initiated Signaling in the Yeast Saccharomyces cerevisiae: A Comprehensive Analysis

 * Authors: TT, DE
 * Status: JT and TT to edit (not working well, what should DE do?)
 * Goal : Submit by ???

Sri #1 : Measures & models of phage T7 mRNA

 * Authors: HK, DE, SK
 * Status: Sri needs to provide Fig 4, Drew needs to edit
 * Goal : Submit by end of August

Drew #1 : A common signal carrier for genetic devices

 * Authors: Austin, Drew, Tom, Randy, Samantha
 * Status: DE to expand and rewrite
 * Goal : Submit by end of August

Drew #2 : Free as in phosphoramidites, or equivalent

 * Authors: DG and DE
 * Status: DE to write
 * Goal : Submit by end of August

DE #1 :CoTS

 * Authors: DE
 * Status: DE outlining
 * Goal : Proposal by end of August

DE #2 :I2SB

 * Authors: DE
 * Status: DE outlining
 * Goal : Outline by end of August

Blank #1 : Title, or equivalent

 * Authors: your names here
 * Status: your names here
 * Goal : Submit by some date