Shreffler R course:Materials

Quick reference [[Media:R-refcard.pdf|card]] by E. Paradis

Session 1

 * 1) Introduction to R and the working environment
 * 2) Introduction to R studio
 * 3) Introduction to Sweave and 'Reproducible Research'

Assignment 1
lessons 1-4 here

[[Media:R_course_1.zip | Archive file containing slides (pdf), data file and R source code]].

Launch R file directly (double click) from the uncompressed folder so that the R environment variable is set to that folder, otherwise edit lines 55 and 58 to include the correct path to the data file.

Assignment 2
[[Media:R_course_2.pdf | Slides only]]

[[Media:R_course_2.zip]] [[Media:R_lesson1.pdf | Slides only]]

Assignment 3

 * [[Media:BasoAct_Boxplots.R | BasoAct_Boxplots.R]]
 * Lara's script to generate boxplots of the interim basophil data using this [[Media:20080818_BaselineBasoDataWithClinicalGroups.csv | data file]].

Shows subsetting, some descriptive statistics and some manipulation of graphs.

Archive file [[Media:BasoAct_Boxplots.zip | here]] including pdf's of output.

Assignment 4
[[Media:R_course_3_assign.zip]]

Analysis of JAX pcr data producing scatter and boxplot figures