J'aime C. Moehlman's Week 4

Activity 1: Part 2

 * 1) Accession number of the chosen sequence: AF089139
 * 2) Subject: 3. The features section of the record talks about subject 3.

FASTA sequences on a word document: [[Media:J'aimes Sequences.doc| Example FASTA Sequences]]

Activity 1: Part 3

 * 1) Created a workbench account with the user name of jmoehlman.
 * 2) Saved my FASTA data into the Biology Workbench
 * 3) Viewed the Help page for using the ClustalW tool in the nucleic tools.
 * 4) *It shows how this tool helps to perform multiple sequence alignment on protein or nucleic sequences.

Activity 2: Part 1
[[Media:J'aime Unrooted tree example.pdf| Unrooted Tree Example]]
 * 1) added all of the first visit nucleic acid sequences.
 * 2) This data table shows 3 clones from 4 different subjects:
 * 3) Data Table:
 * 4) *Subject:     Clone:
 * 5) *      1              1,2,3
 * 6) *      2           1,2,3
 * 7) *      3         -    1,2,3
 * 8) *      4              1,2,3
 * 1) On the tree on the link above; it shows all of the clones of each subject clustering together.
 * 2) Subjects 1 and 2 cluster together, while 3 and 4 are separated in different directions.
 * 3) After analyzing the tree it seems that subjects 1 and 2 are similar in their evolutionary relationships. Subjects 3 and 4 vary more than the others because they show much longer branches.

Activity 2: Part 2

 * 1) The subject clones for the first part of this activity were chosen from subject 15.