User:Carl Boettiger/Notebook/Comparative Phylogenetics/2010/03/16

{| width="800"
 * style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]] Comparative Phylogenetics
 * style="background-color: #F2F2F2" align="center"|  |Main project page
 * style="background-color: #F2F2F2" align="center"|  |Main project page


 * colspan="2"|
 * colspan="2"|

Graham & Peter Meeting

 * Discussed inverse problem approach.
 * Discussed bootstrapping likelihoods directly vs bootstrapping likelihood ratio
 * Integrating over uncertainty in the likelihood assignment

Research Progress

 * Completed writing the bootstrapping function for the partition scheme,
 * ouch2ape function completed for converting ouch tree formats back to ape. modifies code from r-forge
 * More details and log on the repository

Goals for Wainwright meeting tomorrow

 * 1) Repeat Labrid Fin analysis with tripartition
 * 2) Bootstrap likelihood ratio functions

Misc
Thinking about nominations for EVE Seminar speaker
 * Aaron King
 * Joe Felsenstein
 * Marc Mangel
 * Luke Harmon
 * Richard McElreath
 * co-sponsor Katia Koelle


 * }