Biogang:Projects/Visualization of biological data

This is supposed to be a book or a longer document describing current approaches of data visualization.

Types of data

 * sequence
 * structure
 * interactions and other networks
 * dynamics
 * folding

Visualization of sequence data

 * sequence itself
 * similarities: dotplot
 * multidimensional sequence data: sequence logo, profile or HMM
 * secondary structure mapped onto sequence
 * spectrum, statistics, Fourier transform
 * regular expressions
 * binary schemas
 * melody

Visualization of structural data

 * water accessible surface, colors according to physical properties, sequence conservartion etc.
 * structural elements: ss, sse, domains, cartoons
 * activity
 * electrostatics
 * connections, internal coordinates, contact maps
 * density maps