Van Oudenaarden Lab:C38D4.6

Progress:

Probes designed: (3-04-2010 - Ni Ji)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

>C38D4.6a.1 (spliced + UTR - 1309) agaATGTCGG TCGATGTCAA GTCGGATTTT TCGGAAAACG AGTCCTCATC AACACCTTCA CCAACAACAG TTCCAGCAGA TGTCACGTGG CCTCACTATC CAATGATGCC ATTCATGCAA CCACATCCTC TGAGAGAAAA GATGCTGCAA CCAACATTTG ATCCACAAAT CTATGGAAGG TGGTCACAAA TGGGTGATAC TGGTTTTTAC GGACATCCGG ATCTCTATCC ATTCGGCCTT CCACAACTCG CTGCCAACGG ACAAATTCCA GCAGTAGAAG CCGTTGATGT GAAGCCACCG CTTTCGAATG GAAGTAGCAG TAGTGATAGT GGAATGTATC CATCACCGAG TGATATGATG ACACCGTTCC CATCAACATC ATCTGGAGCT GCATCTTCTT CAGAGCTTTC AGCAGCTGCT GCTGCTGCAG CCAACTACCA GATGAGAGCT GCCACGTGTT ATCAGCAATC TGTTTGGCCG TTTATGGATT ATCAACAGTT TCAGGGATTC TCGTGGAAAA TGCCTCTTGG AAACAATCAT GGAAAGGATC GAAGATCAAG CAGTGATGGG AAAACATTAC CAACGGGACC TGGAACGAAT AATGTCCGTG TACGAACAGC TGACAAATAC CGTATGGTTT ACTCGGATTA TCAACGCCTT GAACTGGAAA AAGAATTCCA TACATCGCCA TTCATAACAT CAGATCGCAA GTCCCAATTG TCGACGATGT TAAGCTTGAC AGAACGACAA ATCAAGATTT GGTTTCAAAA TAGGCGTGCA AAGGATCGTC GTGACAAACA GAAGATTCGG CTATAAgtac tcatctactt acaaagaaaa tgtacaaaaa ttctgggaat tttcatattt ttctagaata ttgtacacat ttattatatt tttacatttc tctcgcttga atacggttaa attcacactt ttatataatt tcttcctgtc ccatctccca ttctctcaca tcagaatatt ctaatcatca ctgcccttaa catatatata tatatattta taactttccg atcattcctt ctgctttgta aactaatcca atcattctct aatgaattat tccctaatat agagcttctt tatttattgt gatttcttgt ttcttaccct tctcaaggtt taggaaaaag tttaggtccc catttgttat gtatttactt cccactctga acggatccat tttgaacatg ttttctattt tttggaaaag tttagagaat tctttgcttt tctcacatat cttgattgca tattttttat aacaaaacaa tgaaacaat

Name of probe set: pal-1 Probes designed on Thu, 04 Mar 10 13:57:49 -0700 48 probes designed for target of length 1309

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

acatcgaccgacattctagt, pal-1_1, 1, 2, 45 cgttttccgaaaaatccgac, pal-1_2, 2, 25, 45 ggtgaaggtgttgatgagga, pal-1_3, 3, 47, 50 tgacatctgctggaactgtt, pal-1_4, 4, 70, 45 atcattggatagtgaggcca, pal-1_5, 5, 92, 45 aggatgtggttgcatgaatg, pal-1_6, 6, 114, 45 gttgcagcatcttttctctc, pal-1_7, 7, 136, 45 cttccatagatttgtggatc, pal-1_8, 8, 164, 40 agtatcacccatttgtgacc, pal-1_9, 9, 186, 45 gatccggatgtccgtaaaaa, pal-1_10, 10, 208, 45 tgtggaaggccgaatggata, pal-1_11, 11, 230, 50 aatttgtccgttggcagcga, pal-1_12, 12, 252, 50 tcacatcaacggcttctact, pal-1_13, 13, 277, 45 tacttccattcgaaagcggt, pal-1_14, 14, 301, 45 ggtgatggatacattccact, pal-1_15, 15, 332, 45 gaacggtgtcatcatatcac, pal-1_16, 16, 354, 45 cagctccagatgatgttgat, pal-1_17, 17, 376, 45 gctgaaagctctgaagaaga, pal-1_18, 18, 398, 45 tcatctggtagttggctgca, pal-1_19, 19, 430, 50 ttgctgataacacgtggcag, pal-1_20, 20, 453, 50 aatccataaacggccaaaca, pal-1_21, 21, 475, 40 gagaatccctgaaactgttg, pal-1_22, 22, 497, 45 gtttccaagaggcattttcc, pal-1_23, 23, 519, 45 gatcttcgatcctttccatg, pal-1_24, 24, 542, 45 taatgttttcccatcactgc, pal-1_25, 25, 564, 40 acattattcgttccaggtcc, pal-1_26, 26, 590, 45 tttgtcagctgttcgtacac, pal-1_27, 27, 612, 45 aatccgagtaaaccatacgg, pal-1_28, 28, 634, 45 ttttccagttcaaggcgttg, pal-1_29, 29, 656, 45 gaatggcgatgtatggaatt, pal-1_30, 30, 678, 40 attgggacttgcgatctgat, pal-1_31, 31, 703, 45 gtcaagcttaacatcgtcga, pal-1_32, 32, 725, 45 ccaaatcttgatttgtcgtt, pal-1_33, 33, 747, 35 cctttgcacgcctattttga, pal-1_34, 34, 769, 45 atcttctgtttgtcacgacg, pal-1_35, 35, 791, 45 gtagatgagtacttatagcc, pal-1_36, 36, 813, 40 ccgtattcaagcgagagaaa, pal-1_37, 37, 911, 45 gatgggacaggaagaaatta, pal-1_38, 38, 950, 40 attctgatgtgagagaatgg, pal-1_39, 39, 972, 40 taagggcagtgatgattaga, pal-1_40, 40, 994, 40 ggaatgatcggaaagttata, pal-1_41, 41, 1033, 35 tggattagtttacaaagcag, pal-1_42, 42, 1055, 35 gaagctctatattagggaat, pal-1_43, 43, 1093, 35 ccttgagaagggtaagaaac, pal-1_44, 44, 1133, 45 ggggacctaaactttttcct, pal-1_45, 45, 1156, 45 cagagtgggaagtaaataca, pal-1_46, 46, 1184, 40 acatgttcaaaatggatccg, pal-1_47, 47, 1206, 40 gagaaaagcaaagaattctc, pal-1_48, 48, 1249, 35