Van Oudenaarden Lab:W03A3.1

Progress:

Probes designed: (02-28-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

>W03A3.1 (ceh-10 spliced coding region + 3'-UTR) atggcggtggacgaaatgcagctcgctgcatcaatgcaaatgagcaatcaaatgagcaattcacaacgaatgagcttcgc aattcatgagattctaggcattcagggaaatgcatatctatctcacggatattgtcctcagggaacatttctctcaaatc aacccaatttcatggacattggatcctgtggagtatcagggttcgacagacagctgtgtggtactgactctattggaaat gcacctgctccactgatgtatcgaatgccaatctcaacatcagaggttataacttcggagccccagactcatgtcagctc atcaagcatcttatcatcagcaactacatcaaattcttctggtggtggaagcagtggtggtggtggaaaggcaagcaaga gaaagaagagaagacatcgcacaattttcactcaataccagatcgacgaactcgagaaggcttttcaagattctcattac ccagacatctatgccagagaagtcctagctggaaagacagaattgcaagaagatcggattcaggtatggttccaaaaccg tcgtgcaaaatggcgaaaaaccgagaaaacctggggaaaaagtaccataatggcagaatatgggctatatggagcaatgg tacggcattctcttccacttccggaaacaattacaaagtcagctgaggcggcggatccacaacaaagtgctgctccgtgg ttgttaggaatgcacaagaaaagtatggaagctgcggctcacttggagagtgttgaaaaatgtgatatgtcggatagtga tgatgatgaccgtccggtaactcctccagtgcaacgtcaagtgaaaaacgagtacaaaccacgaataattgagcatgttc aacaacaagctccccaacatcagtcatcattgaatttcgatacttcacttgttgtcagttcctcactttcacaattacat tttcaggattctcaaatgattccgaacaataatgcttcattgaagctttatcatgattacaataatcccatgtaa

ctctatttttccgtgaatttcaa tgtcaataactattacctaaataataaattaatctgc

Name of probe set: ceh-10

Probes designed on Sun, 28 Feb 10 18:44:48 -0700

48 probes designed for target of length 1095

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

tgcatttcgtccaccgccat, ceh-10_1, 1, 1, 55

catttgcattgatgcagcga, ceh-10_2, 2, 23, 45

gtgaattgctcatttgattg, ceh-10_3, 3, 45, 35

tgaattgcgaagctcattcg, ceh-10_4, 4, 67, 45

tccctgaatgcctagaatct, ceh-10_5, 5, 89, 45

atccgtgagatagatatgca, ceh-10_6, 6, 111, 40

agaaatgttccctgaggaca, ceh-10_7, 7, 133, 45

gtccatgaaattgggttgat, ceh-10_8, 8, 158, 40

ctgatactccacaggatcca, ceh-10_9, 9, 180, 50

ccacacagctgtctgtcgaa, ceh-10_10, 10, 202, 55

tgcatttccaatagagtcag, ceh-10_11, 11, 224, 40

ttcgatacatcagtggagca, ceh-10_12, 12, 246, 45

acctctgatgttgagattgg, ceh-10_13, 13, 268, 45

agtctggggctccgaagtta, ceh-10_14, 14, 290, 55

agatgcttgatgagctgaca, ceh-10_15, 15, 312, 45

tttgatgtagttgctgatga, ceh-10_16, 16, 334, 35

actgcttccaccaccagaag, ceh-10_17, 17, 356, 55

tcttgcttgcctttccacca, ceh-10_18, 18, 381, 50

gtgcgatgtcttctcttctt, ceh-10_19, 19, 403, 45

gtcgatctggtattgagtga, ceh-10_20, 20, 428, 45

cttgaaaagccttctcgagt, ceh-10_21, 21, 450, 45

tagatgtctgggtaatgaga, ceh-10_22, 22, 472, 40

ttccagctaggacttctctg, ceh-10_23, 23, 495, 50

cgatcttcttgcaattctgt, ceh-10_24, 24, 517, 40

gttttggaaccatacctgaa, ceh-10_25, 25, 539, 40

tttttcgccattttgcacga, ceh-10_26, 26, 561, 40

ctttttccccaggttttctc, ceh-10_27, 27, 583, 45

cccatattctgccattatgg, ceh-10_28, 28, 605, 45

gccgtaccattgctccatat, ceh-10_29, 29, 627, 50

gtttccggaagtggaagaga, ceh-10_30, 30, 649, 50

cgcctcagctgactttgtaa, ceh-10_31, 31, 671, 50

cagcactttgttgtggatcc, ceh-10_32, 32, 693, 50

tgcattcctaacaaccacgg, ceh-10_33, 33, 715, 50

cgcagcttccatacttttct, ceh-10_34, 34, 737, 45

tttcaacactctccaagtga, ceh-10_35, 35, 759, 40

tcactatccgacatatcaca, ceh-10_36, 36, 781, 40

agttaccggacggtcatcat, ceh-10_37, 37, 803, 50

tttcacttgacgttgcactg, ceh-10_38, 38, 827, 45

ttattcgtggtttgtactcg, ceh-10_39, 39, 849, 40

gcttgttgttgaacatgctc, ceh-10_40, 40, 871, 45

caatgatgactgatgttggg, ceh-10_41, 41, 893, 45

gacaacaagtgaagtatcga, ceh-10_42, 42, 917, 40

gtaattgtgaaagtgaggaa, ceh-10_43, 43, 939, 35

ggaatcatttgagaatcctg, ceh-10_44, 44, 964, 40

gcttcaatgaagcattattg, ceh-10_45, 45, 987, 35

gggattattgtaatcatgat, ceh-10_46, 46, 1010, 30

tcacggaaaaatagagttac, ceh-10_47, 47, 1032, 35

ggtaatagttattgacattg, ceh-10_48, 48, 1056, 30