Berglund:Databases/Websites

Databases Through Our Lab: Plasmid Ordering http://imbseq.uoregon.edu/request.php Inventory Intron Finder http://introns.uoregon.edu/ Centrifuge Helper http://zfish3.uoregon.edu/scripts/CentrifugeHelper.HTM

Websites: SFold (our most recommended folding program) http://sfold.wadsworth.org/ 3D Motif Finder (RNA) http://rna.bgsu.edu/FR3D Structure program http://rna.bgsu.edu/ribostral MFold http://www.bioinfo.rpi.edu/applications/mfold/rna/form1.cgi UnaFold (replaces MFold and is by Zucker) http://www.bioinfo.rpi.edu/applications/hybrid/download.php Ensembl Genome Browser http://www.ensembl.org/index.html NCBI/PubMed http://www.ncbi.nlm.nih.gov/#Menu10945557#Menu10945557 Web Color Reference for HTML etc http://www.webreference.com/html/reference/color/websafe.html#HEAD-3 Multiple EM for Motif Elicitation http://meme.sdsc.edu/meme/meme.html Weblogo http://weblogo.berkeley.edu/logo.cgi Reverse Complement http://bioinformatics.org/sms/rev_comp.html Gathering information from Protein/RNA/DNA sequences http://www.rna.icmb.utexas.edu/linxs/2/seq-info.html DNA toolbox http://www.dnatwopointo.com/commerce/misc/sms2.jsp