User:Tk/Notebook/MF/2009/03/17

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 * style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]] Mesoplasma florum simplification
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DnaA binding sites in MF genome
Location of ttwtmcaca sequences in MF using the tool at: RSAT

See Gorinov05 paper for a discussion of dnaA binding sequences in genomes.

R  1359   1367 tttcTTTTCCACAcaaa (dnaA - dnaN intergenic region) D  1429   1437 agtgTTTTCCACAtatc (dnaA - dnaN intergenic region) R 28522  28530 actaTTTTCCACAttag  within Mfl020 R 34340  34348 ttgtTTTTCCACAacca  within Mfl024 D 39493  39501 aagtTTATACACAacag  within Mfl027 R 43747  43755 tattTTTTACACAtttc (Mfl031 (nagB) - Mfl033 (rpiR like) intergenic region) R 50002  50010 gataTTTTACACAtatt  within Mfl036 D 100820 100828 atttTTTTACACAaggt within Mfl079 D 102723 102731 gcttTTTTACACAaatt (Mfl079 - Mfl080 (rpsF, S6) intergenic region) D 124924 124932 tactTTTTACACAaata within Mfl100 D 215208 215216 atttTTATACACAttta within Mfl184 D 306952 306960 gtgaTTTTACACAaata within Mfl268 R 361959 361967 tgttTTTTACACAtttg within Mfl312 R 387775 387783 gtggTTTTACACAagta within Mfl320 D 397117 397125 gtttTTTTACACAaaaa (Mfl341 - Mfl342 (guaA) intergenic region) (gmp synthase) R 431744 431752 ttttTTATACACAagaa (Mfl369 (comEC) - Mfl370 intergenic region) D 459432 459440 aatcTTTTACACAtgta within Mfl399 D 550979 550987 taatTTTTACACAggtg within Mfl466 R 597220 597228 aagtTTTTACACAaaaa within Mfl507 D 633823 633831 gttcTTTTACACAataa within Mfl537 D 636681 636689 tttgTTATACACAacag within Mfl541 D 643823 643831 gtatTTATCCACAaaaa within Mfl551 D 676297 676305 tgtgTTTTCCACAtttc (Mfl580 (dnaB) - Mfl581 (mutM) intergenic region) D 683642 683650 aagaTTATCCACAgcct within Mfl584 D 692095 692103 ctatTTTTCCACAacca within Mfl592 D 692765 692773 tatgTTTTCCACAtatg within Mfl594 D 698876 698884 taaaTTTTCCACAaaaa within Mfl597 (5' end of rpoC) R 705083 705091 caatTTTTCCACAtaat within Mfl600 R 710926 710934 ttctTTTTACACAtaaa within Mfl606 R 740017 740025 acaaTTATCCACAaaat within Mfl634 (prfA) peptide chain release factor R 758091 758099 tgttTTATACACAggtt within Mfl652 R 770620 770628 cagcTTTTACACAaatg within Mfl664 R 793070 793078 ccacTTTTCCACAaaag (Mfl683 (rpmH) - Mfl001 (dnaA) intergenic region) D 793158 793166 ttttTTATCCACAcatt (Mfl683 (rpmH) - Mfl001 (dnaA) intergenic region) R 793170 793178 aaagTTTTCCACAatgt (Mfl683 (rpmH) - Mfl001 (dnaA) intergenic region)


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