User:Lindenb/Notebook/UMR915/20101025

Project Integragen
Generating input for PPH2

cat AllChrom.exome.snp.*tion |cut -d '    ' -f 1,2,7,11 |\ awk '{printf("%s:%d %s",$2,$1,$4); for(i=1;i<= length($3);i++) {c=substr($3,i,1);if(c==$4) continue; printf("/%s",c);} printf("\n");}' |\ grep -v "chrom" | sort | uniq

wc = 71691

code for analyzing data: http://code.google.com/p/code915/source/browse/trunk/tools/src/java/fr/inserm/umr915/tools/Integragen20101022.java

start PPH2: 9H45 end at 12H00