User:TheLarry/Notebook/Larrys Notebook/2010/09/09

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 * style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]] Discrete State Kinesin Model
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 * style="background-color: #F2F2F2" align="center"|  |Main project page


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Neck Linker Length Changes
Now that i have the normal conditions for the neck linker length 13 aa neck linker 26 aa full neck .38 nm per aa persistence length of .8 nm I want to make a graph of longer neck lengths and see if processivity goes down (hopefully) so i'll write the numbers down here so i don't get confused

14 aa neck linker

 * 14 aa neck linker = 5.32 nm
 * 28 aa full neck = 10.64 nm
 * 18 aa docked neck = 6.84 nm
 * 8 aa double docked = 3.04 nm

15 aa neck linker

 * 15 aa neck linker = 5.7 nm
 * 30 aa full neck = 11.4 nm
 * 20 aa docked neck = 7.6 nm
 * 10 aa double docked = 3.8 nm

16 aa neck linker

 * 16 aa neck linker = 6.08 nm
 * 32 aa full neck = 12.16 nm
 * 22 aa docked neck = 8.36 nm
 * 12 aa double docked = 4.56 nm

17 aa neck linker

 * 17 aa neck linker = 6.46 nm
 * 34 aa full neck = 12.92 nm
 * 24 aa docked neck = 9.12 nm
 * 14 aa double docked = 5.32 nm

Good that should be enough



Unfortunately the processivity increased with neck length, but the velocity went down that was interesting


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