Van Oudenaarden Lab:ZK652.5

Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

>ZK652.5 (ceh-23 spliced coding region + 3'-UTR)

atggacacccatcttccattccaaactttgccagtttcaacgccgctgcctgtgtcttcatcatctctaacagacgttct tcaaacaattgctgctttacaagcctgtcccacatcctgtataccttcaacatcaactggaatgctttcaccgaatcttc ccttctcggctacaattccacgtgtcaacttgttcccaccatcacaaccagccaattctttaatactgccaacaattcca gcacagccttttattccaaatccatctctcctgcaagccaatccatctgctgtcgaagctcttgcaaatgcactttttgc aacaacaagccgtcgggcttcttgcccagaacctcctgcatcctctcaagcaaccgtcacgcttcaagtcccatctacgg gttctccagaacgacgacgttattcagaaacaaatatggaggttctgctacgtgaacaacttgcacaattgatgcctcca acctctcaactacccggaatgcctggatgttattatcaacatgttccagctgctggaacttcaggaattcaaggatcatt agatgcggcgttaatgggagctgttcccttggctatgaatagtatggcacatagtcggagagcagcaaatcatagaaaag caagaacaatctacggtacaacacaaactcaacaactggaagatatgtttaaaggacaaatgtacgtagtcggagcagaa cgagaaaatcttgctcaacgccttggcctatcaccttctcaagttagaatttggtttcaaaaccggagaagcaaacatcg taggaaacaacaagaggagcaacagagcacgacgttagaagaaaaatctgaagaaattggaaaagatgaagaggaagatg atgaagaagatgaagatgatgtaaaagttctgaattaa

tttaattttttttttcgtgtttacttgtttatttcctgccatattctgttttagaaaataattaga aaaaatgtgtatattcttgattataaagcattaaacaaataaagttttatgtgaactt

Name of probe set: ceh-23

Probes designed on Mon, 01 Mar 10 12:32:28 -0700

47 probes designed for target of length 1042 (target too short for 48 probes)

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

aatggaagatgggtgtccat, ceh-23_1, 1, 1, 45

cgttgaaactggcaaagttt, ceh-23_2, 2, 23, 40

atgatgaagacacaggcagc, ceh-23_3, 3, 45, 50

gtttgaagaacgtctgttag, ceh-23_4, 4, 67, 40

acaggcttgtaaagcagcaa, ceh-23_5, 5, 89, 45

ttgaaggtatacaggatgtg, ceh-23_6, 6, 111, 40

ggtgaaagcattccagttga, ceh-23_7, 7, 133, 45

tgtagccgagaagggaagat, ceh-23_8, 8, 155, 50

ggaacaagttgacacgtgga, ceh-23_9, 9, 177, 50

agaattggctggttgtgatg, ceh-23_10, 10, 200, 45

ctggaattgttggcagtatt, ceh-23_11, 11, 222, 40

ggatttggaataaaaggctg, ceh-23_12, 12, 244, 40

atggattggcttgcaggaga, ceh-23_13, 13, 267, 50

atttgcaagagcttcgacag, ceh-23_14, 14, 290, 45

cggcttgttgttgcaaaaag, ceh-23_15, 15, 313, 45

aggttctgggcaagaagccc, ceh-23_16, 16, 335, 60

cggttgcttgagaggatgca, ceh-23_17, 17, 357, 55

gtagatgggacttgaagcgt, ceh-23_18, 18, 379, 50

acgtcgtcgttctggagaac, ceh-23_19, 19, 401, 55

cctccatatttgtttctgaa, ceh-23_20, 20, 423, 35

gcaagttgttcacgtagcag, ceh-23_21, 21, 445, 50

agaggttggaggcatcaatt, ceh-23_22, 22, 467, 45

atccaggcattccgggtagt, ceh-23_23, 23, 489, 55

gctggaacatgttgataata, ceh-23_24, 24, 511, 35

ttgaattcctgaagttccag, ceh-23_25, 25, 533, 40

ttaacgccgcatctaatgat, ceh-23_26, 26, 555, 40

atagccaagggaacagctcc, ceh-23_27, 27, 577, 55

ccgactatgtgccatactat, ceh-23_28, 28, 599, 45

cttttctatgatttgctgct, ceh-23_29, 29, 621, 35

gttgtaccgtagattgttct, ceh-23_30, 30, 643, 40

atcttccagttgttgagttt, ceh-23_31, 31, 665, 35

cgtacatttgtcctttaaac, ceh-23_32, 32, 687, 35

ttttctcgttctgctccgac, ceh-23_33, 33, 709, 50

taggccaaggcgttgagcaa, ceh-23_34, 34, 731, 55

aaattctaacttgagaaggt, ceh-23_35, 35, 753, 30

ttgcttctccggttttgaaa, ceh-23_36, 36, 775, 40

ctcttgttgtttcctacgat, ceh-23_37, 37, 797, 40

ctaacgtcgtgctctgttgc, ceh-23_38, 38, 819, 55

ccaatttcttcagatttttc, ceh-23_39, 39, 841, 30

atcatcttcctcttcatctt, ceh-23_40, 40, 863, 35

ttacatcatcttcatcttct, ceh-23_41, 41, 885, 30

aaattaaattaattcagaac, ceh-23_42, 42, 907, 15

aaacaagtaaacacgaaaaa, ceh-23_43, 43, 929, 25

ctaaaacagaatatggcagg, ceh-23_44, 44, 953, 40

acacattttttctaattatt, ceh-23_45, 45, 975, 15

aatgctttataatcaagaat, ceh-23_46, 46, 997, 20

tcacataaaactttatttgt, ceh-23_47, 47, 1019, 20