IGEM:IMPERIAL/2007/Experimental Design/Phase1/Results 2.2

= In vitro Testing of pTet-LuxR-pLux-GFP Construct=

Aims
To determine if the following constructs work in vitro:
 * pTet-LuxR-pLux-GFP

To determine the consistency and efficacy of using different combinations of cell extract:
 * pLux with Commercial(CM) S30 cell extract and CM Premix
 * pLux with Homemade(HM) S30 cell extract and HM Premix
 * pLux with HM S30 cell extract and CM Premix

Since it has been ascertained that the commercial extract works with pTet, the pLux construct should work in the first combination. This is to be compared with that of the second combination to test for the efficiency of the HM extract. The third combination investigates the possibility of combining our homemade cell extract with the commercial premix rather than the homemade one.

Tested on  24-08-2007

Materials and Methods
Refer to protocols page.

Test: 24-08-2007
In vitro Testing of pTet-LuxR-pLux-GFP at 25&deg;C

Controls:
 * Positive control - diluted GFP solution of equal volume
 * Negative control - S30 cell extract of equal volume

Discussion
Fig.1 indicates that there was a fair amount of expression of GFP with the pTet-LuxR-pLux-GFP construct, leading to an increase in fluoresence over time. To this, it can be concluded that the construct is working well in vitro.

The optimization of cell extracts for commercial use is probably the reason for the discrepency in terms of coupled transcription/translation performance. Indeed while the homemade cell extract was found to be working, it was less than half as efficient as that of the commercial extract, presumably due to the fact that it was a crude attempt at emulating protocols obtained from various journals. Despite the reduction in efficiency, homemade cell extracts have the advantage of being more cost effective, and larges batches of homogenous cell extracts can be obtained as opposed to the reaction mixtures sold by commercial firms.

The use of large batches of homogenous cell extracts is essential for the consistency of subsequent experiments as it was found that the quality control of commercial cell extracts depended on its minimum yield. This means that the variation across cell extracts can be significant, and different batches of cell extracts will yield different coupled transcription/translation performance. As such, it may be a wiser decision to maintain the homogeneity of cell extracts across each experiment.

Conclusion

 * pTet-LuxR-pLux-GFP construct works in vitro.
 * Commercial cell extracts performed better than our homemade cell extracts.
 * It is integral to maintain the homogeneity of cell extracts across our experiments.