Wikiomics:List of articles

This is the list of the most important articles of this wiki. If you create an article in this wiki, just insert a link on this page. Not all articles need to be listed here, just do what feels right. There is also a space for wanted articles. Also, see Special:Categories for all the categories which are used to tag articles, and Special:Allpages for all the pages.

General

 * What is bioinformatics?
 * Bioinformatics tutorial
 * External collections of bioinformatics links which are well-maintained and recognized as useful by biologists
 * Wikiomics:Other wikis and forums in the field of bioinformatics
 * Wikiomics:Bioinformatics journals: what they provide and where to submit (new)
 * Wikiomics:Cool links: links to bioinformatics-related projects, documents or communities of special interest.

Sequence analysis
between a pair of sequences?]]
 * Practical guide to BLAST and its different flavors
 * [[Wikiomics:Percentage identity | How to compute the percentage identity
 * How to deal with the multiple sequence alignment?

Proteins

 * Techniques and resources for automated protein function prediction
 * Practical guide to BLAST and its different flavors
 * In-silico simulation of Site Directed Mutagenesis procedure or how to find best targets

Protein structure

 * Searching for 3D functional sites in a protein structure without any requirement of sequence or fold similarity
 * RMSD howto
 * PDB File Howto
 * Protein volume: definitions and tools

RNA

 * RNA secondary structure prediction
 * Single sequence folding
 * Structures from alignments
 * Simultaneous alignment and structure prediction
 * Aligning RNA structures
 * RNA homology search
 * Probabilistic methods (SCFG/CM and HMMs)
 * Descriptor-based methods
 * Family specific methods (eg. tRNAs, miRNAs)
 * RNA gene-finding
 * RNA databases
 * Sequence databases
 * Alignment and consensus secondary structure databases
 * Tertiary structure databases
 * RNA phylogenetics
 * Alignment visualization and plotting RNA structures
 * RNA Tertiary structure prediction

Phylogenetics

 * Building phylogenetic trees
 * Phylogenetic databases

Microarrays

 * Wikiomics:Exon_microarrays
 * Wikiomics:Quality Control
 * Wikiomics:Background subtraction
 * Wikiomics:Microarray normalization
 * Wikiomics:Statistical Modeling
 * Wikiomics:Dimension reduction
 * Wikiomics:Annotation
 * Wikiomics:Inferences

SNP and CGH Data

 * Quality Control
 * Background subtraction
 * Normalization
 * Integration with Microarray data analysis

Chromatin Immunoprecipitation

 * ChIP-chip Analysis Software

Proteomics

 * Protein mass spectrometry
 * Protein microarray

Genome Annotation

 * Viewing and sharing genome annotations
 * Gene-finding

Viruses

 * Tools for annotation and analysis of viral genomes

Linux

 * Specialized Linux distributions for bioinformatics

Bioinformatics and databases

 * Database downloads

Large-scale and intensive computing

 * Grid computing in practice

Communities and labs

 * Automated function prediction of genes and proteins
 * Godzik Lab
 * ScientistSolutions Bioinformatics Forum

External Medical Reference Links

 * eMedicine Physician contributed medical articles and CME
 * KMLE Medical Dictionary Medical dictionary and medical related links
 * NLM (US National Library of Medicine, contains resources for patients and health care professionals)
 * WebMD General comprehensive online health information

Wikiforum: open questions and wanted articles
Ask questions and build solutions collaboratively at our wikiforum. It is like a forum where threads would eventually evolve into clean tutorials: anyone can ask questions about bioinformatics. Just create a page where your specific question is asked. Once satisfying answers are given, the page can be moved to the list of articles above.

Tip: you can get an email notification when a question is being answered, but you have to register:
 * 1)  create an account or log in,
 * 2) confirm your email address in your preferences,
 * 3) watch the pages that interest you.


 * (no questions so far)