Van Oudenaarden Lab:C33D12.7

Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

>C33D12.7 (ceh-30 spliced coding region)

cttgtcttatagtcacccctcatcgtccgacaataaccaatcatcggtgccttcaacagtgtcgcattcccgactttcga acgtgcaaagcattcgtttaacacttttctacagtaccactcacttcccaaa

atgtcacttctcgaccctcggcagtttctgcttcccgctttttatctggatccgactacacaagcacttctagctcaagc agcttcaacttccccgtgcaacaaaatttcgtcttcttcttcattccgcatttctgacattctcgagcaatccccaaaca attcatcccattcaaacgatcacgacccatcgccacaatcaattaaatctgatttttcaacttcgccaagagcaagcagc cccggcggcgatcgaatgggtagtccaggcagttgcaaaaaatctcggaaggcaagaaccatcttcactgacaagcagtt gcaagagttggagaatacatttgaaaagcaaaagtatctatcagtccaggacaggatggatttggcgcacagaatgggtc tcactgatactcaagtcaagacgtggtaccaaaatagaagaacaaaatggaagcgacaggcaacaagtggaatggatctt ctatcggaacctggaaacctctccgcagttcagaacttgatcagaagcagtccatattgggccaactatatcacagcctt acctatgggcactcagctaccgatgatgggcctacccatgtctatgattgttcccccagcccatgctttccagccttcct cctcttcaaattctccatccactcacatatccagtgaatcccctcagttggatgtttccagcaactcagaatag

tatttcttgtgttaatttttaaaatttgtatgtaatattttcaattaaagtc acaaaaaccgatctcaatgggttagatagggagaagacgctttctttttttcacaacattgcatatgtatcgcttgtgtt atttttattttgcttgattatgtcatttccacgtcattaataataatattattatttt

Name of probe set: ceh-30

Probes designed on Mon, 01 Mar 10 12:44:47 -0700

47 probes designed for target of length 1036 (target too short for 48 probes)

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

aggggtgactataagacaag, ceh-30_1, 1, 1, 45

gattggttattgtcggacga, ceh-30_2, 2, 23, 45

cgacactgttgaaggcaccg, ceh-30_3, 3, 45, 60

gcacgttcgaaagtcgggaa, ceh-30_4, 4, 67, 55

aaaagtgttaaacgaatgct, ceh-30_5, 5, 89, 30

tgggaagtgagtggtactgt, ceh-30_6, 6, 111, 50

cgagggtcgagaagtgacat, ceh-30_7, 7, 133, 55

aaaagcgggaagcagaaact, ceh-30_8, 8, 155, 45

cttgtgtagtcggatccaga, ceh-30_9, 9, 177, 50

gaagctgcttgagctagaag, ceh-30_10, 10, 199, 50

aattttgttgcacggggaag, ceh-30_11, 11, 221, 45

tgcggaatgaagaagaagac, ceh-30_12, 12, 243, 45

gattgctcgagaatgtcaga, ceh-30_13, 13, 265, 45

tgaatgggatgaattgtttg, ceh-30_14, 14, 287, 35

gtggcgatgggtcgtgatcg, ceh-30_15, 15, 309, 65

gaaaaatcagatttaattga, ceh-30_16, 16, 331, 20

gctgcttgctcttggcgaag, ceh-30_17, 17, 353, 60

tacccattcgatcgccgccg, ceh-30_18, 18, 375, 65

gattttttgcaactgcctgg, ceh-30_19, 19, 397, 45

gaagatggttcttgccttcc, ceh-30_20, 20, 419, 50

actcttgcaactgcttgtca, ceh-30_21, 21, 441, 45

tgcttttcaaatgtattctc, ceh-30_22, 22, 463, 30

gtcctggactgatagatact, ceh-30_23, 23, 485, 45

ttctgtgcgccaaatccatc, ceh-30_24, 24, 507, 50

acttgagtatcagtgagacc, ceh-30_25, 25, 529, 45

tctattttggtaccacgtct, ceh-30_26, 26, 551, 40

cctgtcgcttccattttgtt, ceh-30_27, 27, 573, 45

agaagatccattccacttgt, ceh-30_28, 28, 595, 40

ggagaggtttccaggttccg, ceh-30_29, 29, 617, 60

ttctgatcaagttctgaact, ceh-30_30, 30, 639, 35

tagttggcccaatatggact, ceh-30_31, 31, 661, 45

gcccataggtaaggctgtga, ceh-30_32, 32, 683, 55

ggcccatcatcggtagctga, ceh-30_33, 33, 705, 60

ggaacaatcatagacatggg, ceh-30_34, 34, 727, 45

aggctggaaagcatgggctg, ceh-30_35, 35, 749, 60

atggagaatttgaagaggag, ceh-30_36, 36, 771, 40

gattcactggatatgtgagt, ceh-30_37, 37, 793, 40

gctggaaacatccaactgag, ceh-30_38, 38, 815, 50

acaagaaatactattctgag, ceh-30_39, 39, 837, 30

catacaaattttaaaaatta, ceh-30_40, 40, 859, 10

gtgactttaattgaaaatat, ceh-30_41, 41, 881, 20

taacccattgagatcggttt, ceh-30_42, 42, 903, 40

aagaaagcgtcttctcccta, ceh-30_43, 43, 925, 45

acatatgcaatgttgtgaaa, ceh-30_44, 44, 947, 30

aaataaaaataacacaagcg, ceh-30_45, 45, 969, 25

gtggaaatgacataatcaag, ceh-30_46, 46, 991, 35

taataatattattattaatg, ceh-30_47, 47, 1013, 5