Etchevers:Notebook/STRA6 in eye development/2009/08/03

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 * style="background-color: #EEE"|[[Image:C14.jpg|128px]] Genetics of human eye development
 * style="background-color: #F2F2F2" align="center"|  |Main project page
 * style="background-color: #F2F2F2" align="center"|  |Main project page


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Actually done on August 1st
Made a proper organization of new Dell in Paris lab. Installed Ubuntu from a live DVD just in case; this has more drivers on it, so will reconstitute what is necessary if need to reinstall. Have a dual boot but if choose XP it goes back to the former dual boot with Ubuntu that had been nested inside XP - fix that later.

Also compiled FindPeaks.

 heather@embryo:~/trunk$ ant fpsuite

Buildfile: build.xml

cleanfp:

initfp: [mkdir] Created dir: /home/heather/trunk/jars/fp4

compile: [javac] Compiling 138 source files to /home/heather/trunk/classes

FindPeaks: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/FindPeaks.jar [delete] Deleting directory /home/heather/trunk/tmp

SeparateReads: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/SeparateReads.jar [delete] Deleting directory /home/heather/trunk/tmp

SortFiles: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/SortFiles.jar [delete] Deleting directory /home/heather/trunk/tmp

GenomeViewer: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/AlignSlice.jar [delete] Deleting directory /home/heather/trunk/tmp

ConvertToBed: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/ConvertToBed.jar [delete] Deleting directory /home/heather/trunk/tmp

MaqPetToBed: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/MaqPetToBed.jar [delete] Deleting directory /home/heather/trunk/tmp

BowtieToBedFormat: [mkdir] Created dir: /home/heather/trunk/tmp [jar] Building jar: /home/heather/trunk/jars/fp4/BowtieToBedFormat.jar [delete] Deleting directory /home/heather/trunk/tmp

buildfp:

fptestdata: [copy] Copying 1 file to /home/heather/trunk/jars/fp4

changelog: [copy] Copying 1 file to /home/heather/trunk/jars

fpsuite:

BUILD SUCCESSFUL

Total time: 5 seconds

heather@embryo:~/trunk$


 * Heather 13:07, 1 August 2009 (EDT):


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