User talk:Darek Kedra/sandbox 7

=CSB2007=

FlowerPower is a protein homology clustering algorithm, similar to PSI-BLAST in its iterated approach to alignment, profile construction, and homolog identification, but with distinct differences. More information.
 * MEDUSA (promoters) http://www.ccls.columbia.edu/compbio/medusa/
 * Phylogenomics Phylo Facts
 * FlowerPower


 * EDGEdb C.elegans differentially expressed gene database

=Proteiomics=

=Align=


 * MANGO zhang (good for ncRNAs?)
 * COBALT @NCBI http://www.ncbi.nlm.nih.gov/tools/cobalt/cobalt.cgi?link_loc=BlastHomeAd#

http://www.ncbi.nlm.nih.gov/pubmed/17332019

=Ancestral seq reconstruction= http://prodata.swmed.edu/ancescon/ancescon.php

=Clusters=


 * CLANS (Java) @Tubingen graph based
 * ProClust (France) also graph based
 * MCL / Ortho-MCL HMM-based