MIT CSBi PhDs

Click on the arrow atop each column to resort the table.

{| class="wikitable sortable" !Name!!E-mail!!Class!!Lab!!UG Inst.!!UG Major!!Thesis!!Personal page!!Defended!!Currently
 * Katherine Romer||kromer@mit.edu||2008||David Page||MIT||Computer Science, Biology||Regulation of sperm production in the mouse||||-||-|
 * Christopher Negron||cnegron@mit.edu||2008||Amy Keating||The City College of New York||Physics||Design of coiled-coil interaction networks||||-||-|
 * Orr Ashenberg||orr@mit.edu||2006||Amy Keating;Michael Laub||Harvard College||Chemistry and Chemical Biology||Protein Interaction Specificity in Histidine Kinases||||-||-|
 * Sabrina Spencer||spencers@mit.edu||2004||Peter Sorger||The George Washington Univ||Biology & French Literature||Cell-to-cell variability in apoptosis||website||May, 2009||Postdoc at Stanford Univ||
 * Lawrence David||ldavid@mit.edu||2005||Eric Alm||Columbia Univ.||Biomedical Eng.||Microbial genome evolutionary dynamics||blog||June, 2010||Junior Fellow @ Harvard||
 * Robin Friedman||robinf@mit.edu||2005||Chris Burge and David Bartel||UCSD||Computer Science & Bioinformatics||The specificity and evolution of gene regulatory elements||-||June, 2010||Postdoc at Institut Pasteur, Paris||
 * Michelle Chan||mwchan@mit.edu||2007||Aviv Regev||University of British Columbia||Computer Science & Microbiology||Evolution of Transcriptional Modules in Yeast||-||-||-|
 * Wesley Weng||ycweng@MIT.edu||2005||Scott Manalis||Cornell University||Electrical & Computer Engr||Mass Resonator Sensing of Cellular Dynamics||||-||-|
 * Christoph Engert||christoph@mit.edu||2008||Alexander van Oudenaarden||Heidelberg University (GER)||Mol. Biotech.||Physics of Worm Development (Working Title)||more...||-||-|
 * Albert W. Cheng||awcheng@mit.edu||2007||Chris Burge;Rudolf Jaenisch||Hong Kong University of Science and Technology (HKUST)||Biochemistry||Gene regulation during cancer metastasis, early embryogenesis and somatic cell reprogramming||homepage||-||-|
 * Emily Miraldi||emiraldi@mit.edu||2006||Forest White||Oberlin College||Biochemistry||Network level analysis of hepatic insulin signaling under high fat diet stress||||-||-|
 * Ana Paula Leite||apleite@mit.edu||2008||Aviv Regev||University of Minho (Portugal)||Mathematics||Reconstruction of temporal regulatory networks||homepage||-||-|
 * Naiyan Chen||naiyan@mit.edu||2007||Mriganka Sur;Fatih Yanik||Imperial College London||Biomedical Engineering||Cholinergic modulation in the cortex||||-||-|
 * B. Jesse Shapiro||jesse1@mit.edu||2005||Eric Alm||McGill University||Biology||Looking for signatures of natural selection in the microbial world||||-||-|
 * Charles Lin||chazlin@mit.edu||2006||Chris Burge and Rick Young||Duke University||Biology and Physics||Making sense of divergent transcription||||-||-|
 * Yuchun Guo||yguo@mit.edu||2006||David Gifford||Tsinghua University (China)||Materials Science & Computer Science||Transcriptional regulation in development of motor neurons from embryonic stem cells||||-||-|
 * Vikram Agarwal||vagarwal@mit.edu||2009||David Bartel||University of Texas at Austin||Biology||TBD||||-||-|
 * Xuebing Wu||wuxbl@mit.edu||2009||Phil Sharp||Tsinghua University (China)||Computer Science & Bioinformatics||TBD||homepage||-||-|
 * Ramon Salsas Escat||ramon12@mit.edu||2005||Collin Stultz||Institut Quimic de Sarria (Barcelona, Spain)||Chemistry||Collagen conformational fluctuations and degradation||||-||-|
 * Anna Podgornaia||anna2009@mit.edu||2009||Michael Laub||UC Berkeley||Biochemistry||Sequence space of the two-component signaling interface||||-||-|
 * Grace Zheng||gzheng@mit.edu||2004||Phil Sharp||University of British Columbia||Computer Science||MicroRNA in Embryonic Stem Cells||||-||-|
 * -}
 * Adrian Randall||arandall@mit.edu||2009||Ron Weiss||UNC-Chapel Hill||Chemistry||Engineered Protein Sensing and Transcriptional Actuation||||-||-|
 * Chandni Valiathan||chandni@mit.edu|| 2005 || Leona Samson || Brandeis University||Computer Science and Math ||Gene expression signatures for cell death or survival after DNA damage||||-||-|
 * Yuanyuan Cui||cuiyy@mit.edu|| 2007 || Bruce Tidor || Tsinghua University (China) ||Biology ||Construction and utilization of a Kronecker model for E.coli central carbon metabolic network||||-||-|
 * Alex Robertson||alexrson@mit.edu||2008||Chris Burge||Stanford University||Chemistry||The role of pre-mRNA processing in regulation of gene expression||||-||-|
 * Laura Kleiman||sontag@mit.edu|| 2004||Peter Sorger, Doug Lauffenburger||Rutgers University|| Biomathematics ||Experimental and computational analysis of EGFR pathway phosphorylation and dephosphorylation dynamics||homepage||April 9, 2010||-|
 * Jonathan Rameseder||johnny@mit.edu||2008||Mike Yaffe||Upper Austria University of Applied Sciences||Bioinformatics||An Informatics Platform for RNAi Analysis Using High-Throughput Microscopy and Functional Readouts to Build and Explore Signal Transduction Networks||CV and contact info||-||-|
 * Zi Peng Fan||zifan@mit.edu||2009||TBD||Brandeis University||Biochemistry||TBD||||-||-|
 * Daniel Park||dkpark@mit.edu||2008||Bonnie Berger||UC Irvine||Computer Science, Biology||Protein-protein interaction network inference, prediction of intrinsic protein disorder ||||-||-|
 * Surasak Chunsrivirot||fa833@mit.edu||2006||Bernhardt Trout||MIT||Chemistry||Nucleation of Pharmaceutical Ingredient: a Computational Investigation||||-||-|
 * Yuchun Guo||yguo@mit.edu||2006||David Gifford||Tsinghua University (China)||Materials Science & Computer Science||Transcriptional regulation in development of motor neurons from embryonic stem cells||||-||-|
 * Vikram Agarwal||vagarwal@mit.edu||2009||David Bartel||University of Texas at Austin||Biology||TBD||||-||-|
 * Xuebing Wu||wuxbl@mit.edu||2009||Phil Sharp||Tsinghua University (China)||Computer Science & Bioinformatics||TBD||homepage||-||-|
 * Ramon Salsas Escat||ramon12@mit.edu||2005||Collin Stultz||Institut Quimic de Sarria (Barcelona, Spain)||Chemistry||Collagen conformational fluctuations and degradation||||-||-|
 * Anna Podgornaia||anna2009@mit.edu||2009||Michael Laub||UC Berkeley||Biochemistry||Sequence space of the two-component signaling interface||||-||-|
 * Grace Zheng||gzheng@mit.edu||2004||Phil Sharp||University of British Columbia||Computer Science||MicroRNA in Embryonic Stem Cells||||-||-|
 * -}
 * Adrian Randall||arandall@mit.edu||2009||Ron Weiss||UNC-Chapel Hill||Chemistry||Engineered Protein Sensing and Transcriptional Actuation||||-||-|
 * Chandni Valiathan||chandni@mit.edu|| 2005 || Leona Samson || Brandeis University||Computer Science and Math ||Gene expression signatures for cell death or survival after DNA damage||||-||-|
 * Yuanyuan Cui||cuiyy@mit.edu|| 2007 || Bruce Tidor || Tsinghua University (China) ||Biology ||Construction and utilization of a Kronecker model for E.coli central carbon metabolic network||||-||-|
 * Alex Robertson||alexrson@mit.edu||2008||Chris Burge||Stanford University||Chemistry||The role of pre-mRNA processing in regulation of gene expression||||-||-|
 * Laura Kleiman||sontag@mit.edu|| 2004||Peter Sorger, Doug Lauffenburger||Rutgers University|| Biomathematics ||Experimental and computational analysis of EGFR pathway phosphorylation and dephosphorylation dynamics||homepage||April 9, 2010||-|
 * Jonathan Rameseder||johnny@mit.edu||2008||Mike Yaffe||Upper Austria University of Applied Sciences||Bioinformatics||An Informatics Platform for RNAi Analysis Using High-Throughput Microscopy and Functional Readouts to Build and Explore Signal Transduction Networks||CV and contact info||-||-|
 * Zi Peng Fan||zifan@mit.edu||2009||TBD||Brandeis University||Biochemistry||TBD||||-||-|
 * Daniel Park||dkpark@mit.edu||2008||Bonnie Berger||UC Irvine||Computer Science, Biology||Protein-protein interaction network inference, prediction of intrinsic protein disorder ||||-||-|
 * Surasak Chunsrivirot||fa833@mit.edu||2006||Bernhardt Trout||MIT||Chemistry||Nucleation of Pharmaceutical Ingredient: a Computational Investigation||||-||-|
 * Yuanyuan Cui||cuiyy@mit.edu|| 2007 || Bruce Tidor || Tsinghua University (China) ||Biology ||Construction and utilization of a Kronecker model for E.coli central carbon metabolic network||||-||-|
 * Alex Robertson||alexrson@mit.edu||2008||Chris Burge||Stanford University||Chemistry||The role of pre-mRNA processing in regulation of gene expression||||-||-|
 * Laura Kleiman||sontag@mit.edu|| 2004||Peter Sorger, Doug Lauffenburger||Rutgers University|| Biomathematics ||Experimental and computational analysis of EGFR pathway phosphorylation and dephosphorylation dynamics||homepage||April 9, 2010||-|
 * Jonathan Rameseder||johnny@mit.edu||2008||Mike Yaffe||Upper Austria University of Applied Sciences||Bioinformatics||An Informatics Platform for RNAi Analysis Using High-Throughput Microscopy and Functional Readouts to Build and Explore Signal Transduction Networks||CV and contact info||-||-|
 * Zi Peng Fan||zifan@mit.edu||2009||TBD||Brandeis University||Biochemistry||TBD||||-||-|
 * Daniel Park||dkpark@mit.edu||2008||Bonnie Berger||UC Irvine||Computer Science, Biology||Protein-protein interaction network inference, prediction of intrinsic protein disorder ||||-||-|
 * Surasak Chunsrivirot||fa833@mit.edu||2006||Bernhardt Trout||MIT||Chemistry||Nucleation of Pharmaceutical Ingredient: a Computational Investigation||||-||-|
 * Jonathan Rameseder||johnny@mit.edu||2008||Mike Yaffe||Upper Austria University of Applied Sciences||Bioinformatics||An Informatics Platform for RNAi Analysis Using High-Throughput Microscopy and Functional Readouts to Build and Explore Signal Transduction Networks||CV and contact info||-||-|
 * Zi Peng Fan||zifan@mit.edu||2009||TBD||Brandeis University||Biochemistry||TBD||||-||-|
 * Daniel Park||dkpark@mit.edu||2008||Bonnie Berger||UC Irvine||Computer Science, Biology||Protein-protein interaction network inference, prediction of intrinsic protein disorder ||||-||-|
 * Surasak Chunsrivirot||fa833@mit.edu||2006||Bernhardt Trout||MIT||Chemistry||Nucleation of Pharmaceutical Ingredient: a Computational Investigation||||-||-|
 * Daniel Park||dkpark@mit.edu||2008||Bonnie Berger||UC Irvine||Computer Science, Biology||Protein-protein interaction network inference, prediction of intrinsic protein disorder ||||-||-|
 * Surasak Chunsrivirot||fa833@mit.edu||2006||Bernhardt Trout||MIT||Chemistry||Nucleation of Pharmaceutical Ingredient: a Computational Investigation||||-||-|
 * Surasak Chunsrivirot||fa833@mit.edu||2006||Bernhardt Trout||MIT||Chemistry||Nucleation of Pharmaceutical Ingredient: a Computational Investigation||||-||-|