Van Oudenaarden Lab:T26C11.5

Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

>T26C11.5 (ceh-41 spliced coding region + 3'-UTR)

atgtcccagcattttgtttcaggaccaacctcttgcgatcctgaaaaaaaagttgacttgccatttggctcgcagaaaac aatgagtggcatcattcttcgggccgacgtctcacaggcccataacattgcactgcttatatatggcccggactatctgc ctcaaatggctcttaaaggcgtggaggatcctcatggaaacgtggctccgtcagtgatctcagagccatcagctattgct ccagaagtttcagcaactgatagtcttcaaaaagacacaaaaagcgatgaagcttgtattggcaacatgactacaaattc cgtagaaaaatcagaagaagaaggggaaaaaagcgatgctcagccgtcaaaccaaggaaacccttccagacaaaagcaac ctccaactggcaagagaaagcgggatgatctgcccgcccgcgaacactcggaaacattttcaaatgtagaaggatcatcg gaacgttctacgacaagatcacaaagccgagtcagtcttgacgaggaccgtcagaattcggctccggtccgtcgttcagt tgaagcacacattcttgtgcagaatgcgactccaactgtggttggcggcaacggctcttcgagttcaccacccaagaaga caaagagcccattcaccgagcatgaaattgcagtgatgatggctctttttgaaatcaacaagtctccaaatcatgaagaa gttcaaaaattggctgttcaactgaacctgggctacagaagcgtggctaattttttcatgaacaaacgggccaaggagcg gaaaaaattgcaagggcatggacccgggccctcttaa

t ttgttatttcttttatttttaatatgatttcaatttattcttcaatttattgccaattactgttttttctgaacttgttt tgccaatcctgataattttcttcatttccgaattcccttttccaaagtacatttctgaataatgccataatttttttcct gttctcaatttttacccaagcaatttctttgaagaggaattgatcttatcgagattggtacctgaccattatcaccgatt agaaagtagctcaaattcatagatcattttttccaaagtttcgtcatgaagatttccacaatttttcctaggtcatagct ctttgaaaagtttcactcttcctagctttgaactgtatggaacgtagaattgattattctttattcatctccggtgacct atgtttttcttattctctggttttcgtactttgtttccatattttttcgataccaggttgggttttaggtgaatcttctc agttttctcaactttggattgttgcgtttttgagattttttaaaattaataaaaagttttgctgctc

Name of probe set: ceh-41

Probes designed on Mon, 01 Mar 10 13:39:18 -0700

48 probes designed for target of length 1385

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

ctgaaacaaaatgctgggac, ceh-41_1, 1, 3, 45

tttcaggatcgcaagaggtt, ceh-41_2, 2, 27, 45

gccaaatggcaagtcaactt, ceh-41_3, 3, 50, 45

tgccactcattgttttctgc, ceh-41_4, 4, 72, 45

aatgttatgggcctgtgaga, ceh-41_5, 5, 110, 45

tagtccgggccatatataag, ceh-41_6, 6, 136, 45

ctttaagagccatttgaggc, ceh-41_7, 7, 159, 45

tttccatgaggatcctccac, ceh-41_8, 8, 181, 50

atagctgatggctctgagat, ceh-41_9, 9, 217, 45

agttgctgaaacttctggag, ceh-41_10, 10, 239, 45

gcttcatcgctttttgtgtc, ceh-41_11, 11, 274, 45

tgtagtcatgttgccaatac, ceh-41_12, 12, 296, 40

cttctgatttttctacggaa, ceh-41_13, 13, 318, 35

agcatcgcttttttcccctt, ceh-41_14, 14, 341, 45

aagggtttccttggtttgac, ceh-41_15, 15, 366, 45

gttggaggttgcttttgtct, ceh-41_16, 16, 388, 45

agatcatcccgctttctctt, ceh-41_17, 17, 412, 45

aaatgtttccgagtgttcgc, ceh-41_18, 18, 440, 45

gttccgatgatccttctaca, ceh-41_19, 19, 465, 45

gctttgtgatcttgtcgtag, ceh-41_20, 20, 488, 45

attctgacggtcctcgtcaa, ceh-41_21, 21, 518, 50

tgcttcaactgaacgacgga, ceh-41_22, 22, 548, 50

tcgcattctgcacaagaatg, ceh-41_23, 23, 570, 45

ttgtcttcttgggtggtgaa, ceh-41_24, 24, 624, 45

tttcatgctcggtgaatggg, ceh-41_25, 25, 648, 50

aaaagagccatcatcactgc, ceh-41_26, 26, 670, 45

catgatttggagacttgttg, ceh-41_27, 27, 696, 40

ggttcagttgaacagccaat, ceh-41_28, 28, 729, 45

aattagccacgcttctgtag, ceh-41_29, 29, 753, 45

ttggcccgtttgttcatgaa, ceh-41_30, 30, 775, 45

cccttgcaattttttccgct, ceh-41_31, 31, 797, 45

taacaaattaagagggcccg, ceh-41_32, 32, 825, 45

cagaaaaaacagtaattggc, ceh-41_33, 33, 890, 35

atcaggattggcaaaacaag, ceh-41_34, 34, 912, 40

ctttggaaaagggaattcgg, ceh-41_35, 35, 946, 45

gggtaaaaattgagaacagg, ceh-41_36, 36, 996, 40

ttcctcttcaaagaaattgc, ceh-41_37, 37, 1018, 35

caggtaccaatctcgataag, ceh-41_38, 38, 1043, 45

gagctactttctaatcggtg, ceh-41_39, 39, 1071, 45

cttcatgacgaaactttgga, ceh-41_40, 40, 1110, 40

caaagagctatgacctagga, ceh-41_41, 41, 1144, 45

agctaggaagagtgaaactt, ceh-41_42, 42, 1166, 40

ttctacgttccatacagttc, ceh-41_43, 43, 1188, 40

gtcaccggagatgaataaag, ceh-41_44, 44, 1217, 45

caaagtacgaaaaccagaga, ceh-41_45, 45, 1252, 40

cccaacctggtatcgaaaaa, ceh-41_46, 46, 1281, 45

gaaaactgagaagattcacc, ceh-41_47, 47, 1306, 40

ctcaaaaacgcaacaatcca, ceh-41_48, 48, 1333, 40