Rao:Publications

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Publications
''PDF reprints are provided below within the context of fair use. Please obtain copies from the publisher if appropriate.''

Cellular Stoichiometry of the Chemotaxis Proteins in Bacillus subtilis. Journal of Bacteriology, 2011 Cannistraro VJ, Glekas GD, Rao CV, Ordal GW Pubmed

The role of the mar/sox/rob regulon in regulating outer membrane porin expression. Journal of Bacteriology,193(9):2252-2260, 2011 Chubiz L, Rao CV Pubmed

Continuous control of flagellar gene expression by the σ28–FlgM regulatory circuit in Salmonella enterica Molecular Microbiology, 79(1):264-78, 2011 Saini S, Floess E, Aldridge C, Brown J, Aldridge PD, Rao CV Pubmed PDF

Attractant binding induces distinct structural changes to the polar and lateral signaling clusters in Bacillus subtilis chemotaxis. Journal of Biological Chemistry, 286(4):2587-95, 2011 Wu K, Walukiewicz HE, Glekas GD, Ordal GW, Rao CV PubMed

Site-specific methylation in Bacillus subtilis chemotaxis: The effect of covalent modifications to the chemotaxis receptor McpB. Microbiology, 157(Pt 1):56-65, 2011 Glekas GD, Cates JR, Cohen TM, Rao CV, Ordal GW PubMed

The interaction dynamics of a negative feedback loop regulates flagellar number in Salmonella enterica serovar Typhimurium Molecular Microbiology, 78(6):1416–1430, 2010 Aldridge C, Poonchareon K, Saini S, Soloyva A, Rao CV, Imada K, Minamino T, Aldridge PD PubMed PDF

FliZ Induces a Kinetic Switch in Flagellar Gene Expression Journal of Bacteriology, 192(24):6477-81, 2010 Saini S, Koirala S, Floess E, Mears PJ, Chemla YR, Golding I, Aldridge C, Aldridge PD, Rao CV PubMed PDF

Role of cross talk in regulating the dynamic expression of the flagellar Salmonella pathogenicity island 1 and type 1 fimbrial genes Journal of Bacteriology, 192(21):5767-77, 2010 Saini S, Slauch JM, Aldridge PD, Rao CV PubMed PDF

The role of coupled positive feedback in the expression of the SPI1 type three secretion system in Salmonella PLoS Pathogens, 6(7):e1001025, 2010 Saini S, Ellermeier JR, Slauch JM, Rao CV PubMed PDF

Aromatic acid metabolites of Escherichia coli K-12 can induce the marRAB operon Journal of Bacteriology, 92(18):4786-9, 2010 Chubiz LM, Rao CV PubMed PDF

SprB is the molecular link between Salmonella pathogenicity island 1 (SPI1) and SPI4 Journal of Bacteriology, 192(9):2459-62, 2010 Saini S, Rao CV PubMed PDF

A modular positive feedback-based gene amplifier Journal of Biological Engineering, 26;4:4, 2010 Nistala GJ, Wu K, Rao CV, Bhalerao KD PubMed PDF

The role of configuration and coupling in autoregulatory gene circuits. Molecular Microbiology, 75(2):513-27, 2010 Wu K, Rao CV PubMed PDF

Regulation of arabinose and xylose metabolism in Escherichia coli Applied and Environmental Microbiology, 76(5):1524-32, 2010 Desai TD, Rao CV PubMed PDF

A PAS domain binds asparagine in the chemotaxis receptor McpB in Bacillus subtilis Journal of Biological Chemistry, 285(3):1870-8, 2010 Glekas GD, Foster RM, Cates JR, Estrella JA, Wawrzyniak MJ, Rao CV, Ordal GW PubMed PDF

High-resolution, long-term characterization of bacterial motility using optical tweezers Nature Methods, 6(11):831-5, 2009 Min TL, Mears PJ, Chubiz LM, Rao CV, Golding I, Chemla YR PubMed PDF

The molecular basis of excitation and adaptation during chemotactic sensory transduction in bacteria Contributions to Microbiology, 16:33-64, 2009 Rao CV, Ordal GW PubMed PDF

Engineering transcription factors with novel DNA-binding specificity using comparative genomics Nucleic Acids Research, 37(8):2493-503, 2009 Desai TA, Rodionov DA, Gelfand MS, Alm EJ, Rao CV PubMed PDF

Role of FimW, FimY, and FimZ in regulating the expression of type i fimbriae in Salmonella enterica serovar Typhimurium Journal of Bacteriology, 191(9):3003-10, 2009 Saini S, Pearl JA, Rao CV PubMed PDF

Calling heads from tails: the role of mathematical modeling in understanding cell polarization Current Opinions in Cell Biology, 21(1):74-81, 2009 Onsum MD, Rao CV PubMed PDF

The rate of protein secretion dictates the temporal dynamics of flagellar gene expression Molecular Microbiology, 70(4):924-37, 2008 Brown JD, Saini S, Aldridge C, Herbert J, Rao CV, Aldridge PD PubMed PDF

The three adaptation systems of Bacillus subtilis chemotaxis Trends in Microbiology, 16(10):480-7, 2008 Rao CV, Glekas GD, Ordal GW PubMed PDF

Computational design of orthogonal ribosomes Nucleic Acids Research, 36(12):4038-46, 2008 Chubiz LM, Rao CV PubMed PDF

FliZ Is a posttranslational activator of FlhD4C2-dependent flagellar gene expression Journal of Bacteriology, 190(14):4979-88, 2008 Saini S, Brown JD, Aldridge PD, Rao CV PubMed PDF

The Salmonella SPI1 type three secretion system responds to periplasmic disulfide bond status via the flagellar apparatus and the RcsCDB system Journal of Bacteriology, 190(1):87-97, 2008 Lin D, Rao CV, Slauch JM PubMed PDF

A mathematical model for neutrophil gradient sensing and polarization PLoS Computational Biology, 116;3(3):e36, 2007 Onsum MD, Rao CV PubMed PDF Matlab Code

Phosphatase localization in bacterial chemotaxis: divergent mechanisms, convergent principles Physical Biology, 14;2(3):148-58, 2005 Rao CV, Kirby JR, Arkin AP PubMed PDF

An allosteric model for transmembrane signaling in bacterial chemotaxis Journal of Molecular Biology, 15;343(2):291-303, 2004 Rao CV, Frenklach M, Arkin AP PubMed PDF

Design and diversity in bacterial chemotaxis: a comparative study in Escherichia coli and Bacillus subtilis PLoS Biology, 2(2):E49, 2004 Rao CV, Kirby JR, Arkin AP PubMed PDF

Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm Journal of Chemical Physics, 118(11):4999-5010, 2003 Rao CV, Kirby JR, Arkin AP Url PDF

Constrained state estimation for nonlinear discrete-time systems: stability and moving horizon approximations IEEE Transactions on Automatic Control, 48(2):246-258, 2003 Rao CV, Rawlings JB, Mayne DQ PDF

Control, exploitation and tolerance of intracellular noise Nature, 14;420(6912):246 - 258, 2002 Rao CV, Wolf DM, Arkin AP PubMed PDF

Control motifs for intracellular regulatory networks Annual Reviews in Biomedical Engineering, 3:391-419, 2001 Rao CV, Arkin AP PubMed PDF

Constrained process monitoring: A moving horizon approach AIChE Journal, 48:97–109, 2002. Rao CV, Rawlings JB PDF

Constrained linear state estimation - a moving horizon approach Automatica, 37:1619–1628, 2001 Rao CV, Rawlings JB, Lee JH PDF

Constrained Model Predictive Control: Stability and optimality Automatica, 36:789-814, 2000 Mayne DQ, Rawlings JB, Rao CV, Scokaert POM PDF

Linear Programming and Model Predictive Control Journal of Process Control, 10:283–289, 2000 Rao CV, Rawlings, JB PDF

Steady states and constraints in model predictive control AIChE Journal, 45:1266–1278, 1999 Rao CV, Rawlings JB PDF

Application of Interior-Point Methods to Model Predictive Control Journal of Optimization Theory and Applications, 99(3):723-757, 1998 Rao CV, Wright SJ, Rawlings JB PDF