User:Anders

Anders Andersson
I earned my PhD at the Department of Biotechnology, Royal Institute of Technology (KTH) in 2005. I worked with microarray analysis in Peter Nilsson's group and investigated archaeal (Sulfolobus) replication and transcription in collaboration with Rolf Bernander's (co-supervisor) archaea lab at Uppsala University.

After the PhD I did a one year postdoc in Lars Engstrand's group at the Institute for Infectious Disease Control (SMI) working with 454-based 16S sequencing of human intestinal microbiota. This was followed by a one year postdoc with Jillian Banfield at University of California, Berkeley, working with metagenomic analysis of natural microbial communities (biofilms in acid mine drainage).

In Stefans group I'm working on aquatic microbial communities, in lakes and in the Baltic Sea. My main project is aimed at obtaining a biogeographic map of Baltic Sea microbial life, using 454-based 16S sequencing. A second project deals with diurnal rhythms of lakes.

Email: doubleanders@gmail.com

Publications
Andersson AF, Riemann L, Bertilsson S. Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities. ISME J. 15 October 2009; doi:10.1038

Dick GJ, Andersson AF, Baker BJ, Simmons SL, Thomas BC, Yelton AP, Banfield JF. Community-wide analysis of microbial genome sequence signatures. Genome Biology 2009, 10:R85.

Andersson AF, Lindberg M, Jakobsson H, Bäckhed F, Nyrén P, Engstrand L. Comparative analysis of human gut microbiota by barcoded pyrosequencing. PLoS ONE. 2008 Jul 30;3(7):e2836.

Andersson AF, Banfield JF. Virus population dynamics and acquired virus resistance in natural microbial communities. Science. 2008 May 23;320(5879):1047-50.

Wilmes P, Andersson AF, Lefsrud MG, Wexler M, Shah M, Zhang B, Hettich RL, Bond PL, VerBerkmoes NC, Banfield JF. Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal. ISME J. 2008 May 1.

Rodin S, Andersson AF, Wirta V, Eriksson L, Ljungström M, Björkholm B, Lindmark H, Engstrand L. Performance of a 70mer oligonucleotide microarray for genotyping of Campylobacter jejuni. BMC Microbiol. 2008 May 8;8(1):73.

Skoglund A, Björkholm B, Nilsson C, Andersson AF, Jernberg C, Schirwitz K, Enroth C, Krabbe M and Engstrand L. Functional Analysis of the M.HpyAIV DNA Methyltransferase of Helicobacter pylori. J Bacteriol. 2007 Dec;189(24):8914-21.

Andersson AF, Lundgren M, Eriksson S, Rosenlund M, Bernander R and Nilsson P. Global analysis of mRNA stability in the archaeon Sulfolobus. Genome Biol. 2006. 7(10):R99.

Brouns SJ, Walther J, Snijders AP, van de Werken HJ, Willemen HL, Worm P, de Vos MG, Andersson A, Lundgren M, Mazon HF, van den Heuvel RH, Nilsson P, Salmon L, de Vos WM, Wright PC, Bernander R and van der Oost J. Identification of the missing links in prokaryotic pentose oxidation pathways: evidence for enzyme recruitment. J Biol Chem. 2006 Sep 15;281(37):27378-88.

van der Oost J, Walther J, Brouns SJJ, van de Werken HJG, Snijders APL, Wright PC, Andersson A, Bernander R and de Vos WM (2006). Functional genomics of the thermo-acidophilic archaeon Sulfolobus solfataricus. In: Methods in Microbiology. Extremophiles. (Eds. F. Rainey and A. Oren). Elsevier/Academic Press.

Andersson A, Bernander R and Nilsson P. Dual-genome primer design for construction of DNA microarrays. Bioinformatics, 2005 Feb 1;21(3):325-32.

Lundgren M, Andersson A, Chen L, Nilsson P and Bernander R. Three replication origins in Sulfolobus species: synchronous initiation of chromosome replication and asynchronous termination. Proc Natl Acad Sci U S A, 2004. 101(18): p. 7046-51.

Andersson A, Keskitalo J, Sjodin A, Bhalerao R, Sterky F, Wissel K, Tandre K, Aspeborg H, Moyle R, Ohmiya Y, Brunner A, Gustafsson P, Karlsson J, Lundeberg J, Nilsson O, Sandberg G, Strauss S, Sundberg B, Uhlen M, Jansson S and Nilsson P. A transcriptional timetable of autumn senescence. Genome Biol, 2004. 5(4):R24.

Gharizadeh B, Kaller M, Nyren P, Andersson A, Uhlen M, Lundeberg J and Ahmadian A. Viral and microbial genotyping by a combination of multiplex competitive hybridization and specific extension followed by hybridization to generic tag arrays. Nucleic Acids Res, 2003. 31(22): p. e146.

Hertzberg M, Aspeborg H, Schrader J, Andersson A, Erlandsson R, Blomqvist K, Bhalerao R, Uhlen M, Teeri T-T, Lundeberg J, Sundberg B, Nilsson P and Sandberg G. A transcriptional roadmap to wood formation. Proc Natl Acad Sci U S A, 2001. 98(25): p. 14732-7.