Registry of Standard Biological Models/Basic Component Models/RBS mRNA

CellML structure (CellML 1.1 spec)

 * Component: RBS_mRNA
 * Units:
 * Imported from Environment component
 * Variables:
 * time (public interface = in )
 * translationRate (public interface = none / init value = XXX)
 * K_deg (mRNADegradationRate) (public interface = none / init value = XXX)
 * mRNA (public interface = none / init value = XXX)
 * synthesisRate (public interface = out )


 * MathML
 * \frac{d[mRNA]}{d time} = PoPsIN - K_{deg}*[mRNA]
 * synthesisRate = translationRate*[mRNA]

CellML File
 





     



 

Comments

 * trying to unified the interface between the quasi steady state approximation on the mRNA level and its fully dynamic simulation
 * I try to encapsulate the mRNA dynamic inside the RBS component so it can deliver a 'synthesis-rate' flow to the downstream protein element. This way it would be the same interface a the Promoter_RBS_Coupled element.
 * Don't know if it is possible to define a system of ODEs in the MathML description part of the component ???