Dahlquist:Notebook/Nutrigenomics/2010/02/24

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 * style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]] Nutrigenomics
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 * style="background-color: #F2F2F2" align="center"|  |Main project page


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2/24/10
=GenMAPP Day 2= For increased-LogFC>0.25 and P-value <0.05 For decreased-LogFC<-0.25 and P-value <0.05
 * Created color sets for the four primary comparisons in my study
 * 1) WT12 vs. WT24
 * 2) WT12 vs. TRAMPwater24
 * 3) WT12 vs. TRAMPtreatTumorFree24
 * 4) WT12 vs. TRAMPtreatTumors24
 * The following criterion was set in GenMAPP
 * Colors were set-increased Red and decreased Green
 * Once the color sets were set I proceeded on to the MAPPFinder program

=MAPPFinder=
 * From GenMAPP I accessed MAPPFinder and followed the protocol from the bioinformatics lab for each of the four color sets that I ran


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