User:Lindenb/Notebook/UMR915/20101214

Belgium
samtools pileup -vcf chrXXXXXX.fa sample1.recal.bam | /usr/local/package/samtools-0.1.10/misc/sam2vcf.pl -r chrXXXXXX.fa | wc 24699  246948 1214723 samtools pileup -vcf chrXXXXXX.fa sample2.recal.bam | /usr/local/package/samtools-0.1.10/misc/sam2vcf.pl -r chrXXXXXXX.fa | wc 33684  336798 1678389 using non-recalibrated files: samtools pileup -vcf chrXXXXXX.fa sample1.bam | /usr/local/package/samtools-0.1.10/misc/sam2vcf.pl -r chrXXXXXX.fa | wc 27970  279658 1373141 samtools pileup -vcf chrXXXXXX.fa sample2.bam | /usr/local/package/samtools-0.1.10/misc/sam2vcf.pl -rchrXXXXXX.fa | wc 35725  357208 1777426