Registry/Measurement kit/Notebook/2007-7-25

T9002

 * F2620 was ligated into 3K3(E/P) instead of E/X
 * Re-ligated F2620 (M/X) into 3K3 (E/X) and 1AK3 (E/X)
 * Reaction with 3K3 was left in incubator too long. Made another reaction, will transform both.
 * Transformations went into warm room at 2:30


 * Noticed that F2620 has an internal MfeI site. This could cause problems later on when re-ligating.
 * Could not find alternative enzyme on NEB's site. (ApoI cuts R'AATT_Y, thus is an isoschizomer of EcoRI [G'AATT_C]. Since there is an EcoRI site on the reverse tail, we can't use this.)

Misc

 * Also Digesting more 3K3 (E/P) Making o/n of 3K3
 * Mini-prepped 1AK3, digested E/X, E/P

I2056

 * Ligating into 1AK3; ran out of 3K3.

I2055

 * Re-trying promoter PCR

I2055 Synthesis

 * Making (hopefully silent) 1bp change to remove internal MfeI site. (CAATTG -> CAATCG [codon ATT->ATC (Ile)])

ccdB

 * Started PCRs with E/X tails and S/X tails.

Transformations/overnight stuff

 * O/n of 3K3
 * Transformation of F2620-3K3 (2 samples), F2620-1AK3, and I2056-1AK3.
 * Digesting 1AK3 E/X, E/P