Van Oudenaarden Lab:F29F11.5

Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

>F29F11.5a (ceh-22 spliced coding region)

atgttcaacgtgtcggcgctagcagcagcgacgccttctatcgcttcggtttcatccgttgcaagcccatcggagcaaca tggattgtctacaagtgttggcgtcggagtgaatgataccacttctcgaactggagatggcggcgccgcttcatcggctt caagtgcatcagcggcgccacaacagcagtcacaatcggcacttcataacaaactcgaagctaaatgggacactctactt cccaccgacaccaatttacaatgttccacgtggcctgatagcattccattacttgcaggatattctgctactcccacatt ttccttcgatccttgcacatacggcagctatgatccatctgcatattttgcttcaaacggaattgctggttccatgtaca ctctacctgatcaatttccacgttctgagaatgatatgctagataacagcaatacatcaaatggaaacaaaagcgataaa gatggaatcaaacttgaagatgaagatgaaattctggaagatgaagagaatgacgaagaagatgatggaactggaaaacg gaaaaagagaaagcgtcgcgttttgttcacaaaagcacaaacttatgaacttgaacgacgattccgctcgcaaaaatatc tgagcgcgcctgaacgtgaagctcttgcaatgcaaattcgacttactccgactcaagtaaaaatttggttccaaaatcat cgatacaaaacaaaaaaaagtcatacggataagccaataaacgcggcgcttcttaccacaatgcccaatgcattttcaag tcaatcgacagcggccagttttccaacaagagcaatgccgataccaatgctagtccgtgactcttctgctcgttcttcgg acatttcctcaacatctccatacacggtagcatttggaagtgccaattcaggatacctaccaacaccttccgcctacctc ccagccacttccgggtatttttcaaacggaccttcagcagcttcttcctacatgaccaatactcaatggtggccttcttg a

Name of probe set: ceh-22

Probes designed on Mon, 01 Mar 10 08:28:59 -0700

47 probes designed for target of length 1041 (target too short for 48 probes)

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

agcgccgacacgttgaacat, ceh-22_1, 1, 1, 55

gatagaaggcgtcgctgctg, ceh-22_2, 2, 23, 60

ttgcaacggatgaaaccgaa, ceh-22_3, 3, 45, 45

acaatccatgttgctccgat, ceh-22_4, 4, 69, 45

actccgacgccaacacttgt, ceh-22_5, 5, 91, 55

agttcgagaagtggtatcat, ceh-22_6, 6, 113, 40

atgaagcggcgccgccatct, ceh-22_7, 7, 135, 65

gccgctgatgcacttgaagc, ceh-22_8, 8, 157, 60

cgattgtgactgctgttgtg, ceh-22_9, 9, 179, 50

cttcgagtttgttatgaagt, ceh-22_10, 10, 201, 35

ggaagtagagtgtcccattt, ceh-22_11, 11, 223, 45

acattgtaaattggtgtcgg, ceh-22_12, 12, 245, 40

gaatgctatcaggccacgtg, ceh-22_13, 13, 267, 55

gcagaatatcctgcaagtaa, ceh-22_14, 14, 289, 40

atcgaaggaaaatgtgggag, ceh-22_15, 15, 311, 45

catagctgccgtatgtgcaa, ceh-22_16, 16, 333, 50

gaagcaaaatatgcagatgg, ceh-22_17, 17, 355, 40

catggaaccagcaattccgt, ceh-22_18, 18, 377, 50

gaaattgatcaggtagagtg, ceh-22_19, 19, 399, 40

agcatatcattctcagaacg, ceh-22_20, 20, 421, 40

catttgatgtattgctgtta, ceh-22_21, 21, 444, 30

ccatctttatcgcttttgtt, ceh-22_22, 22, 466, 35

atcttcatcttcaagtttga, ceh-22_23, 23, 488, 30

tctcttcatcttccagaatt, ceh-22_24, 24, 510, 35

gttccatcatcttcttcgtc, ceh-22_25, 25, 532, 45

ctttctctttttccgttttc, ceh-22_26, 26, 554, 35

cttttgtgaacaaaacgcga, ceh-22_27, 27, 576, 40

cgttcaagttcataagtttg, ceh-22_28, 28, 598, 35

atatttttgcgagcggaatc, ceh-22_29, 29, 620, 40

cttcacgttcaggcgcgctc, ceh-22_30, 30, 642, 65

agtcgaatttgcattgcaag, ceh-22_31, 31, 664, 40

aatttttacttgagtcggag, ceh-22_32, 32, 686, 35

tgtatcgatgattttggaac, ceh-22_33, 33, 708, 35

tccgtatgacttttttttgt, ceh-22_34, 34, 730, 30

aagcgccgcgtttattggct, ceh-22_35, 35, 752, 55

atgcattgggcattgtggta, ceh-22_36, 36, 774, 45

gccgctgtcgattgacttga, ceh-22_37, 37, 796, 55

cattgctcttgttggaaaac, ceh-22_38, 38, 818, 40

tcacggactagcattggtat, ceh-22_39, 39, 841, 45

tgtccgaagaacgagcagaa, ceh-22_40, 40, 864, 50

gtgtatggagatgttgagga, ceh-22_41, 41, 886, 45

attggcacttccaaatgcta, ceh-22_42, 42, 908, 40

aaggtgttggtaggtatcct, ceh-22_43, 43, 930, 45

gaagtggctgggaggtaggc, ceh-22_44, 44, 952, 65

aggtccgtttgaaaaatacc, ceh-22_45, 45, 974, 40

tcatgtaggaagaagctgct, ceh-22_46, 46, 996, 45

gaaggccaccattgagtatt, ceh-22_47, 47, 1018, 45