Harvard:Biophysics 101/2007/03/13

Assignment Due Mar 15
Task 1
 * Based on our discussions and assignments thus far, interpret this sequence (manually).
 * Include a specific and detailed outline of what you did and why. Think about how each step could be implemented in python.
 * Summarize your findings in "layman's terms", e.g. what would you, as a physician, tell your patient with this sequence?

>example1 CACCCTCGCCAGTTACGAGCTGCCGAGCCGCTTCCTAGGCTCTCTGCGAATACGGACACG CATGCCACCCACAACAACTTTTTAAAAGAATCAGACGTGTGAAGGATTCTATTCGAATTA CTTCTGCTCTCTGCTTTTATCACTTCACTGTGGGTCTGGGCGCGGGCTTTCTGCCAGCTC CGCGGACGCTGCCTTCGTCCAGCCGCAGAGGCCCCGCGGTCAGGGTCCCGCGTGCGGGGT ACCGGGGGCAGAACCAGCGCGTGACCGGGGTCCGCGGTGCCGCAACGCCCCGGGTCTGCG CAGAGGCCCCTGCAGTCCCTGCCCGGCCCAGTCCGAGCTTCCCGGGCGGGCCCCCAGTCC GGCGATTTGCAGGAACTTTCCCCGGCGCTCCCACGCGAAGC

Task 2
 * Design your own query sequence which could be used in an exercise similar to Task 1.
 * Post your query sequence to your notebook page before class on March 15, but keep your solution private for now.
 * Make sure to use fasta format

Assignment Due Mar 20

 * Write a script to automatically carry out the interpretation you performed manually.