Van Oudenaarden Lab:K03A11.3

Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

>K03A11.3 (ceh-28 spliced coding region + 3'-UTR)

atgcaatctacgcagatttcatctactactgttattttaccaagtgaagtgatccaaccgccacagcaatctgcagttcc ttcagagtttaaaaatacacttccgtcgcgtttaaatctatttgaaggttttgatcagtcattttctgaacttacaaatc catatcaaccagttattccgttgatgcagagagaatccttgttaggtgcaagttcatattatagttctccaagtcaaaat cagagatcttatcagaatcaccgtcaacattctaatccagatactatcaatctgagatcacaacagcagaagagaaaacc gagagttttgttcacacaacatcaggttaatgaacttgaagaacgatttaaaaagcaacgttatgtgacagccactgagc gagaagagctagcccaatgtcttggcctcacagccacacaagtgaaaatttggtttcaaaatcgccgatacaaatgcaag cggttagcccaggacagaaccttacaattgagccagatccctttcaatccaatgtttgcatcagcatttccatttggaat aaacagctttggaactgcaccatcgtcttcttcgtctggatcatga

ttttttttttcaattttttcttcatatttatagctatttttcttttcaattaca ctgtttaacttttgagacgcatatttaacaaaataaataaaaacacacaga

Name of probe set: ceh-28

Probes designed on Mon, 01 Mar 10 12:42:35 -0700

32 probes designed for target of length 711 (target too short for 48 probes)

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

gaaatctgcgtagattgcat, ceh-28_1, 1, 1, 40

tggtaaaataacagtagtag, ceh-28_2, 2, 23, 30

gtggcggttggatcacttca, ceh-28_3, 3, 45, 55

tctgaaggaactgcagattg, ceh-28_4, 4, 67, 45

cgcgacggaagtgtattttt, ceh-28_5, 5, 91, 45

caaaaccttcaaatagattt, ceh-28_6, 6, 114, 25

gtaagttcagaaaatgactg, ceh-28_7, 7, 136, 35

ggaataactggttgatatgg, ceh-28_8, 8, 160, 40

caaggattctctctgcatca, ceh-28_9, 9, 182, 45

tataatatgaacttgcacct, ceh-28_10, 10, 204, 30

ctctgattttgacttggaga, ceh-28_11, 11, 226, 40

ttgacggtgattctgataag, ceh-28_12, 12, 248, 40

tgatagtatctggattagaa, ceh-28_13, 13, 270, 30

ttctgctgttgtgatctcag, ceh-28_14, 14, 292, 45

gaacaaaactctcggttttc, ceh-28_15, 15, 314, 40

gttcattaacctgatgttgt, ceh-28_16, 16, 336, 35

tgctttttaaatcgttcttc, ceh-28_17, 17, 358, 30

ctcagtggctgtcacataac, ceh-28_18, 18, 380, 50

gacattgggctagctcttct, ceh-28_19, 19, 402, 50

acttgtgtggctgtgaggcc, ceh-28_20, 20, 424, 60

ggcgattttgaaaccaaatt, ceh-28_21, 21, 447, 35

gctaaccgcttgcatttgta, ceh-28_22, 22, 469, 45

caattgtaaggttctgtcct, ceh-28_23, 23, 491, 40

ttggattgaaagggatctgg, ceh-28_24, 24, 513, 45

aatggaaatgctgatgcaaa, ceh-28_25, 25, 535, 35

agttccaaagctgtttattc, ceh-28_26, 26, 557, 35

cagacgaagaagacgatggt, ceh-28_27, 27, 579, 50

attgaaaaaaaaaatcatga, ceh-28_28, 28, 601, 15

tagctataaatatgaagaaa, ceh-28_29, 29, 623, 20

acagtgtaattgaaaagaaa, ceh-28_30, 30, 645, 25

aaatatgcgtctcaaaagtt, ceh-28_31, 31, 667, 30

gtgtgtttttatttattttg, ceh-28_32, 32, 689, 20