Lab 4: Plant Anatomy

BISC 111/113: Introductory Organismal Biology

 Introduction to Organismal Biology Lab  Calendar and Assignments

 Statistics and Graphing  Science Writing Guidelines

 Lab 1: Biodiversity  Lab 2: Population Growth  Labs 3-6: Plant Biology  Labs 7-9: Animal Biology  Lab 10: Laboratory Exam  Lab 11: Population Growth 2  Lab 12: Beetle Presentations

Objectives

 * 1) Generate hypotheses about leaf and stomatal structure of plants based on transpiration lab results.
 * 2) Test those hypotheses by quantifying leaf internal anatomy and stomatal size and distribution.

Lab 4 Overview
I. Formulate Hypotheses about Plant Anatomy II. Test Hypotheses about Plant Anatomy  a. Stomatal Anatomy Using Epidermal Peels Stomatal Distribution (top/bottom/total) Stomatal Counts Stomatal Length b. Cross sectional Anatomy of Leaf Using Hand Microtomes Total Leaf Thickness Palisade Mesophyll Thickness Spongy Mesophyll Thickness 

III. Prepare to measure chlorophyll a and b

<dd>a. collect leaf tissue samples for spectrophotometric analysis of Chl a and Chl b. </dl>

IV. Data Analysis and Presentation

<dd>a. Column graph of mean +/- standard deviations of upper and lower leaf stomatal densities for all plants <dd>b. Stacked column graph of mean +/- standard deviations of total leaf thickness, palisade and spongy mesophyll thickness of all plants <dd>c. Composite figure of stomatal peel and leaf cross section for all plants <dd>d. Calculation of mean +/- stomatal conductance index for all plants <dd>e. One-way Analysis of Variance of stomatal conductance index comparing all plants </dl>

Plant Morphology: Background
Today, we will study plant habit and leaf morphology/anatomy, which will help your understanding of various aspects of plant form and function. There are many aspects of plant and leaf morphology/anatomy that may affect the plant's ability to function in its environment.

Epidermal tissue The epidermal tissues of leaves serve a number of key functions: (a) to regulate gas exchange, (b) to prevent excessive water loss, (c) to defend against disease and predation (d) to screen out harmful ultraviolet light.

The epidermis is the outermost covering of the leaf. These cells generally lack chloroplasts. They are packed tightly together and sealed with a waxy coating called the cuticle. This tight packing and wax seal serve to prevent water loss and to stop bacteria and viruses from penetrating the outer surface.

During the period of leaf growth and maturation some epidermal cells differentiate into a complex of cells that regulates the flux of gases (CO2, H2O, O2) into and out of the leaf. Gas-regulating complexes of cells are referred to as stomatal complexes. The cells that compose these complexes are called guard cells and subsidiary cells. They work together to regulate the opening and closing of pores in the epidermis. The subsidiary cells are easily recognized because they are morphologically different from the majority of the other epidermal cells and directly border the guard cells. The pores are called stomata (singular: stoma) and it is through these pores that the movement of gases occurs.

Mesophyll Tissue The ground tissue of the leaf consists of parenchyma cells, which in this case have the specialized names, palisade and spongy mesophyll. Parenchyma is a general term used by plant biologists to refer to the thin walled living cells that form much of the ground tissues in all plant organs. It is between the leaf’s upper and lower epidermis that we find the chloroplast containing palisade and spongy mesophyll cells that perform the main function of the leaf, photosynthesis. Fig. 4.1. Cross-sections (left) and stomata (right) of angiosperms.

Making Epidermal Peels and Measuring Stomatal Densities
Duco cement epidermal peels are like impressions of the leaf surface topography and will include the surface of the epidermis and its stomata. Each person will apply a thin layer of cement (not more than 1-2 cm wide) to both the upper and lower surface of selected leaves while they are attached to the plants. Try to select a leaf from each plant that is mature and of similar age and size-not too young or too old. For each replica use a toothpick to place the duco cement on the leaf blade avoiding the mid-vein and the edge of the leaf. Allow the cement to dry for about 5 minutes. Peel off the transparent cement layer with forceps and mount a small section of it in water on a slide and place it under a cover slip.

When observing the stomatal imprints on the replicas under the compound microscope you will need to maximize image contrast. Do this by reducing light intensity and close down your iris diaphragm located on the substage condenser. Depending on how small the stomata are and their density, you may choose to observe them at a total magnification of 100X or 400X. Always start with the lower power. Your instructor will show you how to take photographs through the eyepiece of your microscope both with and without the grid. Be sure to record the magnification (x 100 or x 400) and share good images with your classmates.

Measurement of stomatal density (number of stomata mm2) In one of the oculars of your microscope you will view a square ocular grid superimposed on the microscopic image. The grid is composed of 100 identical small squares. At 100X magnification each of these small squares has an area of 10,000 µm2 for a total grid area of 1 mm2.

<hr style="width: 725px; border: 4px solid #FF0000;"> Draft a data table in your lab notebook to record your observations. Include Surface (lower or upper), Sample Number, # of stomata / 20 squares, and # of stomata / mm2. <hr style="width: 725px; border: 4px solid #FF0000;">

Start with a peel from the lower leaf surface. At 100X count the number of stomata in the entire square grid, or, if you find the stomata too numerous, count the number of stomata in 20 contiguous small squares of the grid, and multiply by 5 to get an estimate for the entire grid. Repeat on the upper surface peel.NOTE: The stomata included under the whole grid at 100X total magnification represent the number of stomata in 1mm2. If you count the stomata under the whole grid at 400X total magnification multiply by 16 for the final number of stomata in 1mm2. If, at 400X, you count only 20 small squares of the grid you need to multiply by 5 and by 16 for the number of stomata per mm2.


 * 1) Calculate the number of stomata per mm2 for both the lower and the upper leaf surface.
 * 2) Sum the upper and lower to record total stomatal density in 1 mm2 of leaf area.
 * 3) Record your lower, upper, and total stomatal density data on the class data sheet.

Measuring Stomatal Length Using Epidermal Peels
We can make make measurements of the relative sizes or quantities of some of the structures and tissues present within the leaf. Because the measurements are of very small structures the light microscopes in the laboratory are equipped with ocular micrometers. An ocular micrometer looks like a small ruler with uniform intervals on the scale (Fig. 1). Depending on your microscope you will find the micrometer along one edge of the ocular grid or in the other ocular.



The smallest interval on the scale represents a specific distance. The exact distance depends on the objective lens that is being used to observe the specimen. The distance equivalent to the smallest interval on the micrometer for the 10X objective lens (100X total magnification with the 10X ocular) is 10 µm and for the 40X objective lens (400X total magnification) the distance is 2.5 µm. Therefore, if you are observing your structure at a total magnification of 100X and the distance spanned is 20 small intervals, the thickness of the mesophyll layer is calculated as:

10 µm x 20 intervals = 200 µm

Measurement of stomatal aperture length using lower leaf stomatal peels Use the micrometer in the eyepiece. (In some of the microscopes the eyepiece(s)can be turned while others require that you turn the head of the microscope to move the micrometer).

Using the lower leaf Duco cement replicas, measure the length of five different stomata on the surface of the leaves using the ocular micrometer. Record each of these values in your lab notebook and calculate the average and standard deviation of these 5 measurements.

Calculating a Stomatal Conductance Index
Stomatal conductance, or the ability of materials to pass through the stomata of a leaf, is dependent on both the size of the stomata and the total density of stomata on the leaf (Holland and Richardson, 2009). This variable should relate to the rate at which water passed through the stomata of each plant during the transpiration lab.

Each student should calculate the stomatal conductance index for one leaf of their plant using the following formula: <Center>Stomatal conductance = (Guard cell length)2 · Total stomatal density · 10 -4  </Center>

Record your stomatal conductance index value in your lab notebook.

Making a Cross Section of a Leaf Using a Hand Microtome
<hr style="width: 725px; border: 4px solid #FF0000;"> Draft a data table in your lab notebook to record your observations of leaf section anatomy. Include Sample number, palisade mesophyll thickness (μm), spongy mesophyll thickness(μm), and total leaf thickness (μm). <hr style="width: 725px; border: 4px solid #FF0000;">

1. Cut a piece of leaf about 1 cm long and 0.5 cm wide, so that it will fit into the well of the microtome.



2. Fill the well of the microtome with liquid paraffin and use forcepts to place the leaf specimen vertically in the paraffin as quickly as possible, before the wax hardens.

3. Hold the leaf section until the paraffin hardens enough to keep the leaf section in place.

4. Once the paraffin hardens completely, about 5 minutes, use the microtome knife to shave the top of the plug to give a flat surface. Turn the bottom dial of the microtome to elevate the plug slightly and gently cut a thin section. Continue making sections until you have one thin enough to place on a microscope slide so the crossectional inner surface of the leaf is facing up, add a drop of water, and cover with a cover slip.

5. Use the micrometer in the ocular of your microscope to measure the entire thickness of the leaf, the thickness of the palisade mesophyll, and the thickness of the spongy mesophyll.

Measuring Chlorophyll Content: Set up
Prepare to determine Chl a and b content:<BR>


 * 1) Each student will select a different young but fully developed leaf from the lab plant.  <BR>
 * 2) Each student will label 1 tube containing 5 ml of 80% acetone:20% distilled water with your lab section, initials,  plant  name abbreviation, and the date. Label at the top of the tube using a permanent marker.    <BR>
 * 3) Each student will use a one hole punch to take 2 leaf punches from their leaf.  Record the punch diameter in your lab notebook.<BR>
 * 4) Place the 2 punches from each leaf into the acetone:water tube.
 * 5) Seal the tube with the color coded cap.<BR>
 * 6) Each group will label and seal one additional acetone:water tube to use as a blank tube for the spec next week.
 * 7) Each group will place the full set of labeled tubes in the rack for your lab section. <BR>
 * 8) The leaf punches will be stored at 5 °C until next lab.<BR>

Assignments

 * 1) Prepare a composite photo of a representative epidermal peel and cross section of each plant with an appropriate figure caption.
 * 2) Draft a column graph with error bars comparing the conductance indices of the four test species.
 * 3) In preparation for next week's lab, read section 10.2 in Chapter 10, Biological Science by Freeman.

Other Labs in this Section
Lab 3: Transpiration in High Light/High Wind and Low Light/Low Wind Habitats Lab 5: Measurement of Chlorophyll Concentrations and Rates of Photosynthesis in Response to Increasing Light Intensity Lab 6: Group Oral Presentations