Biología Sintética:Herramientas

Visite http://syntheticbiology.org/   Biología Sintética es  A) el diseño y construcción de nuevas partes biologicas, dispositivos y sistemas, y B) el rediseño de sistemas biológicos naturales, ya existentes, para aplicaciones útiles. ( English ) {{Biología Sintética master| body=

Esta página contiene una colección de enlaces a herramientas en línea relacionadas con la Biología Sintética. Si va a editar esta página, por favor trate de mantener los enlaces organizados alfabéticamente por su nombre.

Herramientas para ADN

 * Biopolymer calculator by Schepartz lab
 * Calculate extinction coefficients, Tm's, and base composition for your DNA or RNA; calculate amino acid composition and extinction coefficient for your protein


 * Clipboard by Austin Che
 * Web tool for getting complement, reverse complement, translation and restriction enzyme analysis of a DNA sequence


 * File format converter by Austin Che
 * Web tool for converting between sequence file formats.


 * Gene Design by Boeke lab
 * Collection of online tools for codon optimization and shuffling, restriction site editing, and so on.


 * NEB Cutter by New England Biolabs, Inc.
 * Tool for finding restriction sites, et cetera.


 * Vector NTI by Informax, Inc.
 * Free-to-academics tool for sequence analysis and data management.

Herramientas para ARN

 * Appendix by Ambion, Inc.
 * Website with many useful nucleic acid parameters.


 * mFold by Michael Zuker.
 * This is the main page with links to sites for predicting RNA and DNA folds, calculating Tm's and free energies.

Herramientas para Proteínas

 * Cn3D by NCBI
 * A helper application for your web browser that allows you to view 3-dimensional structures from NCBI's Entrez retrieval service.  It doesn't read PDB files but can be more straightforward to use than DeepView.


 * DeepView by GlaxoSmithKline & Swiss Institute of Bioinformatics
 * Awesome program for viewing and studying protein structure.


 * ExPASy Proteomics server by the Swiss Institute of Bioinformatics
 * Collection of links to many pages to calculate parameters of your favorite proteins


 * Modeller by Sali Lab
 * For homology or comparative modeling of protein three-dimensional structures.


 * Zinc Finger Tools by Barbas Lab
 * Design Zinc Finger DNA binding proteins

Herramientas Generales

 * Colibri by Institut Pasteur
 * E. coli genome site; get sequences, see the position of your gene in the chromosome, see the function of your gene, and other fun stuff. You can also search for protein sequences/motifs within the E. coli genome.


 * Registry of Standard Biological Parts by MIT
 * Open repository of BioBricks; the place for all your standard biological parts.

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