Harvard:Biophysics 101/2007/Notebook:Katie Fifer/2007-3-15

Just realized this should be private, so STOP reading if you haven't done it yet, since it's sort of too late to erase as its cached in history.


 * NT_030059.12	Homo sapiens chromosome 10 genomic contig
 * mutation G to A at position 201
 * used BLAST to figure out which gene and which mutation
 * because of where the start codon is, the mutation is CGG to CAG... arginine to glutamine. This probably is not too big a deal, but I don't know anything about proteins really so I'm not sure.
 * search OMIM - didn't really find anything but not sure I totally understand all the resources available in OMIM

Query 1         CACCCTCGCCAGTTACGAGCTGCCGAGCCGCTTCCTAGGCTCTCTGCGAATACGGACACG  60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42968870  CACCCTCGCCAGTTACGAGCTGCCGAGCCGCTTCCTAGGCTCTCTGCGAATACGGACACG  42968929

Query 61        CATGCCACCCACAACAACTTTTTAAAAGAATCAGACGTGTGAAGGATTCTATTCGAATTA  120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42968930  CATGCCACCCACAACAACTTTTTAAAAGAATCAGACGTGTGAAGGATTCTATTCGAATTA  42968989

Query 121       CTTCTGCTCTCTGCTTTTATCACTTCACTGTGGGTCTGGGCGCGGGCTTTCTGCCAGCTC  180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42968990  CTTCTGCTCTCTGCTTTTATCACTTCACTGTGGGTCTGGGCGCGGGCTTTCTGCCAGCTC  42969049

Query 181       CGCGGACGCTGCCTTCGTCCAGCCGCAGAGGCCCCGCGGTCAGGGTCCCGCGTGCGGGGT  240 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 42969050  CGCGGACGCTGCCTTCGTCCGGCCGCAGAGGCCCCGCGGTCAGGGTCCCGCGTGCGGGGT  42969109

Query 241       ACCGGGGGCAGAACCAGCGCGTGACCGGGGTCCGCGGTGCCGCAACGCCCCGGGTCTGCG  300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42969110  ACCGGGGGCAGAACCAGCGCGTGACCGGGGTCCGCGGTGCCGCAACGCCCCGGGTCTGCG  42969169

Query 301       CAGAGGCCCCTGCAGTCCCTGCCCGGCCCAGTCCGAGCTTCCCGGGCGGGCCCCCAGTCC  360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 42969170  CAGAGGCCCCTGCAGTCCCTGCCCGGCCCAGTCCGAGCTTCCCGGGCGGGCCCCCAGTCC  42969229

Query 361       GGCGATTTGCAGGAACTTTCCCCGGCGCTCCCACGCGAAGC  401 ||||||||||||||||||||||||||||||||||||||||| Sbjct 42969230  GGCGATTTGCAGGAACTTTCCCCGGCGCTCCCACGCGAAGC  42969270

Task2 >katie CTGTGTCTGT AAACTGATGG CTAACAAAAC TAGGATTTTG GTCACTTCTA AAATGGAACA TTTAAAGAAA GCT GACAAAA TATTAATTTT GCATGAAGGT AGCAGCTATT TTTATGGGAC ATTTTCAGAA CTCCAAAATC TACAGC CAGA CTTTAGCTCA AAACTCATGG GATGTGATTC TTTCGACCAA TTTAGTGCAG AAAGAAGAAA TTCAATCCT A ACTGAGACCT TACACCGTTT CTCATTAGAA GGAGATGCTC CTGTCTCCTG GACAGAAACA AAAAAACAAT C TTTTAAACA GACTGGAGAG TTTGGGGAAA AAAGGAAGAA TTCTATTCTC AATCCAATCA ACTCTATACG AAAA TTTTCC ATTGTGCAAA AGACTCCCTT ACAAATGAAT GGCATCGAAG AGGATTCTGA TGAGCCTTTA GAGAGAA GGC TGTCCTTAGT ACCAGATTCT GAGCAGGGAG AGGCGATACT GCCTCGCATC AGCGTGATCA GCACTGGCCC CACGCTTCAG GCACGAAGGA GGCAGTCTGT CCTGAACCTG ATGACACACT CAGTTAACCA AGGTCAGAAC AT TCACCGAA AGACAACAGC ATCCACACGA AAAGTGTCAC TGGCCCCTCA GGCAAACTTG ACTGAACTGG ATATA TATTC AAGAAGGTTA TCTCAAGAAA CTGGCTTGGA AATAAGTGAA GAAATTAACG AAGAAGACTT AAAG