Dahlquist:Notebook/Nutrigenomics/2010/02/03

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 * style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]] Nutrigenomics
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 * style="background-color: #F2F2F2" align="center"|  |Main project page


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2/3/10
=Revising the excel spreadsheet created last week with the data=
 * 1) I went through and revised the excel spreadsheet with all of the data in order to eliminate the information that was not necessary and keep the information that was.
 * 2) The following columns were kept
 * Probe set ID
 * Archival UniGene Cluster
 * UniGene ID
 * Gene Symbol
 * Chromosomal location
 * Ensembl
 * EntrezGene
 * SwissProt
 * RegSeq Protein
 * RegSeq Transcription
 * MGI Name
 * All of the expression values

=Organizing the data=
 * 1) Organized the expression values by grouping the three replicates together for each of the three testing groups (TRAMP water. TRAMP GTC, WT)
 * 2) Made it so that all of the weeks were grouped together as well

=Calculating averages=
 * 1) Calculated average expression values for the three replicates for each treatment method for each of the three weeks


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