User:Morgan G. I. Langille/Notebook/Unknown Genes/2010/09/30

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 * style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]] Unknown Genes
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Alpha diversity

 * Calculated alpha diversity for GOS (and other) samples using PFAM counts
 * This command generates the output files: ./col_alphadiversity.R camera_proteins_vs_pfam.txt alpha_diversity
 * The output files are labeled "alpha_diversity_" followed by the name of the diversity measurement.
 * Each diversity metric is output in two files:
 * "by_sample" just lists the alpha measurements for each sample
 * "hist.pdf" is a pdf of the histogram of the measurements
 * Also, there is a "_plot.pdf" that shows a simple x,y plot of the two alpha measurements.


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