Van Oudenaarden Lab:F46F3.1

Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

>F46F3.1 (ceh-27 spliced coding region + 5'-UTR)

atgtcttctggatcatccaattcctccacatcagcccctaattctgtcacaccaactactgatgctttctcaactctctc catctcagcaccggctacaactgcagcacaaatgtcttattttgccttccctaatcaatatccacatgatttctcaagct acaacacaagtgcggcctacgccaccgctccttacccaatggcaacgcatcctcaactggccaattttaatcgcttccaa accaatcagctgaatttgggacttacgacacagcagaatatgatgatatcacgaagaaagcgacgtgttctcttctcacc tcaacaagttcacgtcctggaacgcaaattccaaatcaacagatatttgagcgccgcggatcgggaaaaccttgcgaaga gtattaacttgtcggcaacacaggtgaaaatctggttccaaaatcaacgctacaagtgcaagagacaagaaaaagagaag aaaatggatggtggatgctatcgggatagtgacagggacactgattcagacagagacaatgatagtagtggatcacttgg aagttcgatgtctggaatcaagaaggaagaagatgaagatcggaaaccattcatgccatcagcagtttcatctgatacag cttgtcttccggatatctcacaacaagcattcccatatcagatgtacccttcgagttcatatatgcctccgttcttcgca taccaagcacctcctgcaaactatcctccgtctacatacaatttatcgacatcagcatttcataacctttag

ctgacattcaactatgctcaattttttttttaattttc tcaatttcaatctaaaaatctcgtgactcttctgttctctttccttccccaatcctcaatgagcttctcatttttttatt ccaaaaattgaaaaatcccaacactaaactggtatgtatttatatgcgttgttgctatatttttgatattatataatctt

Name of probe set: ceh-27

Probes designed on Mon, 01 Mar 10 12:40:29 -0700

44 probes designed for target of length 990 (target too short for 48 probes)

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

ttggatgatccagaagacat, ceh-27_1, 1, 1, 40

aattaggggctgatgtggag, ceh-27_2, 2, 24, 50

gcatcagtagttggtgtgac, ceh-27_3, 3, 46, 50

tgagatggagagagttgaga, ceh-27_4, 4, 68, 45

ttgtgctgcagttgtagccg, ceh-27_5, 5, 92, 55

tagggaaggcaaaataagac, ceh-27_6, 6, 114, 40

gagaaatcatgtggatattg, ceh-27_7, 7, 136, 35

taggccgcacttgtgttgta, ceh-27_8, 8, 160, 50

ttgccattgggtaaggagcg, ceh-27_9, 9, 186, 55

aaattggccagttgaggatg, ceh-27_10, 10, 208, 45

ctgattggtttggaagcgat, ceh-27_11, 11, 230, 45

gtgtcgtaagtcccaaattc, ceh-27_12, 12, 252, 45

cgtgatatcatcatattctg, ceh-27_13, 13, 274, 35

gaagagaacacgtcgctttc, ceh-27_14, 14, 296, 50

ggacgtgaacttgttgaggt, ceh-27_15, 15, 318, 50

ttgatttggaatttgcgttc, ceh-27_16, 16, 340, 35

atccgcggcgctcaaatatc, ceh-27_17, 17, 362, 55

tactcttcgcaaggttttcc, ceh-27_18, 18, 384, 45

acctgtgttgccgacaagtt, ceh-27_19, 19, 406, 50

cgttgattttggaaccagat, ceh-27_20, 20, 430, 40

ttcttgtctcttgcacttgt, ceh-27_21, 21, 452, 40

caccatccattttcttctct, ceh-27_22, 22, 474, 40

ctgtcactatcccgatagca, ceh-27_23, 23, 496, 50

gtctctgtctgaatcagtgt, ceh-27_24, 24, 518, 45

caagtgatccactactatca, ceh-27_25, 25, 540, 40

ttgattccagacatcgaact, ceh-27_26, 26, 562, 40

ccgatcttcatcttcttcct, ceh-27_27, 27, 584, 45

ctgctgatggcatgaatggt, ceh-27_28, 28, 606, 50

agacaagctgtatcagatga, ceh-27_29, 29, 628, 40

tgcttgttgtgagatatccg, ceh-27_30, 30, 650, 45

aagggtacatctgatatggg, ceh-27_31, 31, 672, 45

aacggaggcatatatgaact, ceh-27_32, 32, 694, 40

aggaggtgcttggtatgcga, ceh-27_33, 33, 716, 55

atgtagacggaggatagttt, ceh-27_34, 34, 738, 40

aatgctgatgtcgataaatt, ceh-27_35, 35, 760, 30

gaatgtcagctaaaggttat, ceh-27_36, 36, 782, 35

aaaaaaaaaattgagcatag, ceh-27_37, 37, 804, 20

ttagattgaaattgagaaaa, ceh-27_38, 38, 826, 20

gaacagaagagtcacgagat, ceh-27_39, 39, 848, 45

ttgaggattggggaaggaaa, ceh-27_40, 40, 870, 45

ggaataaaaaaatgagaagc, ceh-27_41, 41, 893, 30

gtgttgggatttttcaattt, ceh-27_42, 42, 915, 30

cgcatataaatacataccag, ceh-27_43, 43, 939, 35

aatatcaaaaatatagcaac, ceh-27_44, 44, 961, 20