Swartz:Papers

'''List of all publications, organized by year. See a list organized by project'''

For other papers by James Swartz please check out pubmed

2011
Bingham AS, Smith PR, Swartz JR. Evolution of an [FeFe] hydrogenase with decreased oxygen sensitivity. International Journal of Hydrogen Energy (2011) doi:10.1016/j.ijhydene.2011.02.048

Smith PR, Bingham AS, Swartz JR. Generation of hydrogen from NADPH using an [FeFe] hydrogenase. International Journal of Hydrogen Energy (2011) doi:10.1016/j.ijhydene.2011.03.172

Kuchenreuther JM, George SJ, Grady-Smith CS, Cramer SP, Swartz JR. Cell-free H-cluster Synthesis and [FeFe] Hydrogenase Activation: All Five CO and CN Ligands Derive from Tyrosine. PLoS One 6, e20346 (2011)

Bundy BC, Swartz JR. Efficient disulfide bond formation in virus-like particles. J Biotechnol (2011)

Yang WC, Swartz JR. A filter microplate assay for quantitative analysis of DNA binding proteins using fluorescent DNA. Anal Biochem 415(2), 167-74 (2011).

Patel KG, Swartz JR. Surface functionalization of virus-like particles by direct conjugation using azide-alkyne click chemistry. Bioconjug Chem 22, 376-87 (2011).

Patel KG, Ng PP, Levy S, Levy R, Swartz JR. Escherichia coli-based production of a tumor idiotype antibody fragment - tetanus toxin fragment C fusion protein vaccine for B cell lymphoma. Protein Expr Purif 75, 15-20 (2011).

2010
Stapleton JA, Swartz JR. Development of an in vitro compartmentalization screen for high-throughput directed evolution of [FeFe] hydrogenases. PLoS ONE 5, e15275 (2010).

Kuchenreuther JM, Grady-Smith CS, Bingham AS, George SJ, Cramer SP, Swartz JR. High-yield expression of heterologous [FeFe] hydrogenases in Escherichia coli. PLoS ONE 5, e15491 (2010).

Bonomo J, Welsh JP, Manthiram K, Swartz JR. Comparing the functional properties of the Hsp70 chaperones, DnaK and BiP. Biophys Chem 149, 58-66 (2010).

Stapleton JA, Swartz JR. A cell-free microtiter plate screen for improved [FeFe] hydrogenases. PLoS ONE 5, e10554 (2010).

Bundy BC, Swartz JR. Site-specific incorporation of p-propargyloxyphenylalanine in a cell-free environment for direct protein-protein click conjugation. Bioconjug Chem 21, 255-63 (2010).

2009
Patel KG, Ng PP, Kuo CC, Levy S, Levy R, Swartz JR. Cell-free production of Gaussia princeps luciferase--antibody fragment bioconjugates for ex vivo detection of tumor cells. Biochem Biophys Res Commun 390, 971-6 (2009).

Yang WC, Patel KG, Lee J, Ghebremariam YT, Wong HE, Cooke JP, Swartz JR. Cell-free production of transducible transcription factors for nuclear reprogramming. Biotechnol Bioeng 104, 1047-58 (2009).

Welsh JP, Patel KG, Manthiram K, Swartz JR. Multiply mutated Gaussia luciferases provide prolonged and intense bioluminescence. Biochem Biophys Res Commun 389, 563-8 (2009).

Kuchenreuther JM, Stapleton JA, Swartz JR. Tyrosine, cysteine, and S-adenosyl methionine stimulate in vitro [FeFe] hydrogenase activation. PLoS ONE 4, e7565 (2009).

Hovijitra NT, Wuu JJ, Peaker B, Swartz JR. Cell-free synthesis of functional aquaporin Z in synthetic liposomes. Biotechnol Bioeng 104, 40-9 (2009).

Swartz JR. Universal cell-free protein synthesis. Nat Biotechnol 27, 731-2 (2009).

Goerke AR, Swartz JR. High-level cell-free synthesis yields of proteins containing site-specific non-natural amino acids. Biotechnol Bioeng 102, 400-16 (2009).

Jewett MC, Miller ML, Chen Y, Swartz JR. Continued protein synthesis at low [ATP] and [GTP] enables cell adaptation during energy limitation. J Bacteriol 191, 1083-91 (2009).

2008
Wuu JJ, Swartz JR. High yield cell-free production of integral membrane proteins without refolding or detergents. Biochim Biophys Acta 1778, 1237-50 (2008).

Bundy BC, Franciszkowicz MJ, Swartz JR. Escherichia coli-based cell-free synthesis of virus-like particles. Biotechnol Bioeng 100, 28-37 (2008).

Goerke AR, Loening AM, Gambhir SS, Swartz JR. Cell-free metabolic engineering promotes high-level production of bioactive Gaussia princeps luciferase. Metab Eng 10, 187-200 (2008).

Goerke AR, Swartz JR. Development of cell-free protein synthesis platforms for disulfide bonded proteins. Biotechnol Bioeng 99, 351-67 (2008).

Boyer ME, Stapleton JA, Kuchenreuther JM, Wang CW, Swartz JR. Cell-free synthesis and maturation of [FeFe] hydrogenases. Biotechnol Bioeng 99, 59-67 (2008).

Jewett MC, Calhoun KA, Voloshin A, Wuu JJ, Swartz JR. An integrated cell-free metabolic platform for protein production and synthetic biology. Mol Syst Biol 4, 220 (2008).

2007
Woodrow KA, Swartz JR. A sequential expression system for high-throughput functional genomic analysis. Proteomics 7, 3870-9 (2007).

Knapp KG, Goerke AR, Swartz JR. Cell-free synthesis of proteins that require disulfide bonds using glucose as an energy source. Biotechnol Bioeng 97, 901-8 (2007).

Kanter G, Yang J, Voloshin A, Levy S, Swartz JR, Levy R. Cell-free production of scFv fusion proteins: an efficient approach for personalized lymphoma vaccines. Blood 109, 3393-9 (2007).

Knapp KG, Swartz JR. Evidence for an additional disulfide reduction pathway in Escherichia coli. J Biosci Bioeng 103, 373-6 (2007).

Calhoun KA, Swartz JR. Energy systems for ATP regeneration in cell-free protein synthesis reactions. Methods Mol Biol 375, 3-17 (2007).

2006
Woodrow KA, Airen IO, Swartz JR. Rapid expression of functional genomic libraries. J Proteome Res 5, 3288-300 (2006).

Calhoun KA, Swartz JR. Total amino acid stabilization during cell-free protein synthesis reactions. J Biotechnol 123, 193-203 (2006).

Boyer ME, Wang CW, Swartz JR. Simultaneous expression and maturation of the iron-sulfur protein ferredoxin in a cell-free system. Biotechnol Bioeng 94, 128-38 (2006).

2005
Underwood KA, Swartz JR, Puglisi JD. Quantitative polysome analysis identifies limitations in bacterial cell-free protein synthesis. Biotechnol Bioeng 91, 425-35 (2005).

Voloshin AM, Swartz JR. Efficient and scalable method for scaling up cell free protein synthesis in batch mode. Biotechnol Bioeng 91, 516-21 (2005).

Calhoun KA, Swartz JR. An economical method for cell-free protein synthesis using glucose and nucleoside monophosphates. Biotechnol Prog 21, 1146-53 (2005).

Calhoun KA, Swartz JR. Energizing cell-free protein synthesis with glucose metabolism. Biotechnol Bioeng 90, 606-13 (2005).

Yang J, Kanter G, Voloshin A, Michel-Reydellet N, Velkeen H, Levy R, Swartz JR. Rapid expression of vaccine proteins for B-cell lymphoma in a cell-free system. Biotechnol Bioeng 89, 503-11 (2005).

Liu DV, Zawada JF, Swartz JR. Streamlining Escherichia coli S30 extract preparation for economical cell-free protein synthesis. Biotechnol Prog 21, 460-5 (2005).

2004
Yang J, Kanter G, Voloshin A, Levy R, Swartz JR. Expression of active murine granulocyte-macrophage colony-stimulating factor in an Escherichia coli cell-free system. Biotechnol Prog 20, 1689-96 (2004).

Jewett MC, Swartz JR. Substrate replenishment extends protein synthesis with an in vitro translation system designed to mimic the cytoplasm. Biotechnol Bioeng 87, 465-72 (2004).

Yin G, Swartz JR. Enhancing multiple disulfide bonded protein folding in a cell-free system. Biotechnol Bioeng 86, 188-95 (2004).

Jewett MC, Swartz JR. Mimicking the Escherichia coli cytoplasmic environment activates long-lived and efficient cell-free protein synthesis. Biotechnol Bioeng 86, 19-26 (2004).