Synthetic Biology:Semantic web ontology/Query

Miscellaneous

 * RDF Query Survey - query language survey
 * A Comparison of RDF Query Languages from 2005-04-11
 * Redland Rasqal RDF Query Demonstration
 * Sesame RQL: a Tutorial
 * Algae an RDF Query Language used in the W3C Annotea Server
 * Life Sciences Queries - ESW Wiki
 * Yeast Hub query form
 * RDF Data Access Working Group (DAWG)
 * DawgShows - ESW Wiki
 * URIQA (URI Query Agent) is a model for knowledge discovery, both from authoritative sources as well as from arbitrary third party sources. It introduces an extension to the present web architecture used to indicate to a web server that it should resolve the specified URI in terms of knowledge about the resource denoted by that URI rather than in terms of a representation of the resource in question.
 * CBD - Concise Bounded Description
 * Semantic Web Methods for HTTP: URIQA extends the present web architecture by introducing the following new HTTP methods for interacting with an authoritative semantic web enabled web server:
 * MGET - return a concise bounded description of the resource denoted by the request URI
 * MPUT - add the statements contained in a concise bounded description of the resource, provided as input, to the (possibly empty) body of knowledge maintained about the resource denoted by the request URI
 * MDELETE - remove the statements contained in a concise bounded description of the resource, provided as input, from the existing knowledge maintained about the resource denoted by the request URI

RDQL

 * 1) RDQL - A Query Language for RDF - W3C submission
 * 2) RDQL Tutorial from phpxmlclasses project
 * 3) A Programmer's Introduction to RDQL - Jena tutorial

SPARQL
The SPARQL Protocol and RDF Query Language (SPARQL) is a query language and protocol for RDF.

REST conceptualizes (and HTTP standardizes) public interfaces; SPARQL standardizes how one interacts, ad hoc'edly and without central control, with arbitrary slices of someone else's data.


 * SPARQL Wikipedia article (specs, articles, tutorials, examples, demos)
 * SPARQL FAQ
 * SPARQL Query Language for RDF
 * SPARQL Query Results XML Format
 * SPARQL Protocol for RDF
 * SPARQL: Web 2.0 Meet the Semantic Web @ oreillynet.com
 * Introducing SPARQL: Querying the Semantic Web @ xml.com
 * Search RDF data with SPARQL @ ibm.com (using Jena Toolkit)
 * Ajax and Sparql
 * SPARQL RDF Query Language Reference
 * ARQ - SPARQL tutorial