Van Oudenaarden Lab:K02B12.1

Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

>K02B12.1 (ceh-6 spliced coding region)

atgctcataccttcgtcgtcatccataccgtcttctttatctgcttcagcatccgattctgagccatcatcactgaacgg aagtggtataagtgatcagaatattctacctaattatcatcttcatcatcatctaattaacgagaacgagatggaggcag ccaattatgcacaggttatcaaaccaacatgcgaggcattccaagattggccgcatactccaatgctgtatcaacaacct caacttcatttcatgcttccacaacacgattgggcatatccacatcttgctcaatctctacctcctccacatcatctaac accgtccactgcagcagttgctgctgcaacaattgcctcacaaagttcaataatcaatcaaacgtctgtggttacaagta caccttcgtgccaaatcaaacaggaagttgaacgacctgaaattattcagaggttaatgcctccatggccaccagcttat caattttcttgtgatgatagtggatcagtgagtggagctggtggaccacatcagccattatctgatatttccgatgatag tgaacagacgtgtccagatgatttggaaggatttgcaaaacaatttaagcagagaagaatcaaattaggatacacacaag cagatgtaggtgtggctctcggaacactctacggaaatatattttcccagacaacaatttgtcgttttgaagcgcttcaa ctctctttcaagaatatgtgcaaactaaagccacttctattcaaatggctcgaggaagctgattcaacgactggctcgcc caattctacatttgaaaaaatgacagggcaagctggaagaaagagaaagaagagaacaagcattgaggtcaatgtaaaat ctcgtcttgaattccatttccagtcgaatcagaagccaaatgcacaagagattacacaagttgccatggagttgcagctt gagaaagaggttgtccgtgtctggttctgcaatcgtcgtcaaaaagagaagcgaatagctccaaatcaatacgatgctcc acatccaatggctttaaacaatggatatccaatgactgctgaccttttcccatatcaagccgtcgtcaatcattatactc aacagagcccgagacaacaatag

Name of probe set: ceh-6

Probes designed on Mon, 01 Mar 10 08:50:39 -0700

48 probes designed for target of length 1143

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

gacgacgaaggtatgagcat, ceh-6_1, 1, 1, 50

agataaagaagacggtatgg, ceh-6_2, 2, 23, 40

gctcagaatcggatgctgaa, ceh-6_3, 3, 45, 50

taccacttccgttcagtgat, ceh-6_4, 4, 69, 45

ggtagaatattctgatcact, ceh-6_5, 5, 91, 35

cgttctcgttaattagatga, ceh-6_6, 6, 129, 35

gcataattggctgcctccat, ceh-6_7, 7, 151, 50

cgcatgttggtttgataacc, ceh-6_8, 8, 174, 45

tatgcggccaatcttggaat, ceh-6_9, 9, 198, 45

ggttgttgatacagcattgg, ceh-6_10, 10, 220, 45

gtggaagcatgaaatgaagt, ceh-6_11, 11, 243, 40

tgtggatatgcccaatcgtg, ceh-6_12, 12, 265, 50

aggaggtagagattgagcaa, ceh-6_13, 13, 287, 45

tggacggtgttagatgatgt, ceh-6_14, 14, 309, 45

ttgttgcagcagcaactgct, ceh-6_15, 15, 333, 50

attattgaactttgtgaggc, ceh-6_16, 16, 355, 35

cttgtaaccacagacgtttg, ceh-6_17, 17, 379, 45

tttgatttggcacgaaggtg, ceh-6_18, 18, 401, 45

tttcaggtcgttcaacttcc, ceh-6_19, 19, 423, 45

ggaggcattaacctctgaat, ceh-6_20, 20, 445, 45

aaattgataagctggtggcc, ceh-6_21, 21, 467, 45

cactgatccactatcatcac, ceh-6_22, 22, 491, 45

ataatggctgatgtggtcca, ceh-6_23, 23, 522, 45

gtctgttcactatcatcgga, ceh-6_24, 24, 550, 45

tccttccaaatcatctggac, ceh-6_25, 25, 572, 45

ctctgcttaaattgttttgc, ceh-6_26, 26, 595, 35

catctgcttgtgtgtatcct, ceh-6_27, 27, 627, 45

atttccgtagagtgttccga, ceh-6_28, 28, 659, 45

gacaaattgttgtctgggaa, ceh-6_29, 29, 684, 40

gagagttgaagcgcttcaaa, ceh-6_30, 30, 706, 45

tagtttgcacatattcttga, ceh-6_31, 31, 728, 30

gccatttgaatagaagtggc, ceh-6_32, 32, 750, 45

gtcgttgaatcagcttcctc, ceh-6_33, 33, 772, 50

aaatgtagaattgggcgagc, ceh-6_34, 34, 794, 45

cagcttgccctgtcattttt, ceh-6_35, 35, 816, 45

gcttgttctcttctttctct, ceh-6_36, 36, 842, 40

cgagattttacattgacctc, ceh-6_37, 37, 865, 40

cgactggaaatggaattcaa, ceh-6_38, 38, 887, 40

cttgtgcatttggcttctga, ceh-6_39, 39, 909, 45

ctccatggcaacttgtgtaa, ceh-6_40, 40, 932, 45

acaacctctttctcaagctg, ceh-6_41, 41, 955, 45

acgattgcagaaccagacac, ceh-6_42, 42, 977, 50

gctattcgcttctctttttg, ceh-6_43, 43, 1000, 40

tggagcatcgtattgatttg, ceh-6_44, 44, 1022, 40

ccattgtttaaagccattgg, ceh-6_45, 45, 1045, 40

aaggtcagcagtcattggat, ceh-6_46, 46, 1067, 45

attgacgacggcttgatatg, ceh-6_47, 47, 1091, 45

tcgggctctgttgagtataa, ceh-6_48, 48, 1113, 45