Van Oudenaarden Lab:C37E2.4

Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

>C37E2.4 (ceh-36 spliced coding region + 5'-UTR)

tcaccgccaccctccgcccatttgcggatccgtcgagcacttcgcctgcccccgcatgcaca

atgaccaccaacttctacaccgcctttccgacgctcggctacactgcttatccacaatttgcatttgctgccgcaaccac ggcacccagtcttacatcggcaaccacaagctcaacgacaatggcgccaatggctccaaacagtgaaagcggtcgtcgag caggtcggcgtgaacgtacctcgttcaacagaggacaactcgatcagctggaaaaagttttccgcgaaacacagtatccg gatgtgcacagaagagaagcattggcgaaggcaatcaatttgcctgatggaagggtacaagtaattacggtttggttcaa aaatcgacgagccaaggatagaaacaacaaaaaaatggatggagtccatccgggaagcacttcatcaagatcatccaatg gttctccacacaacgaatcaaagcctgatactaaatcactaggaattcacataccaggcacaccggaattcaatgcacac agtgctgccaaatatgaggcaaactcagcagtcttgagtcaactgcaacagcagcaacagcagcaattgcaacagccaaa aagtgaactggaggactcgaaaccacttgcagataccaaatacgattccactcaatcacttcttcctcaggctcaagctg cagcatatgcatcctacgcaactactgctccttacccgtacaactacaacagctacttcccatcaaacttttactaccaa caatatggaagcaacgattacaccccaaatattactgcctactctccactttaa

Name of probe set: ceh-36

Probes designed on Mon, 01 Mar 10 13:05:46 -0700

37 probes designed for target of length 836 (target too short for 48 probes)

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

aatgggcggagggtggcggt, ceh-36_1, 1, 3, 70

aggcgaagtgctcgacggat, ceh-36_2, 2, 28, 60

tggtggtcattgtgcatgcg, ceh-36_3, 3, 53, 55

gtcggaaaggcggtgtagaa, ceh-36_4, 4, 75, 55

tggataagcagtgtagccga, ceh-36_5, 5, 97, 50

ttgcggcagcaaatgcaaat, ceh-36_6, 6, 119, 45

gatgtaagactgggtgccgt, ceh-36_7, 7, 141, 55

ttgtcgttgagcttgtggtt, ceh-36_8, 8, 164, 45

ctgtttggagccattggcgc, ceh-36_9, 9, 186, 60

acctgctcgacgaccgcttt, ceh-36_10, 10, 208, 60

tgttgaacgaggtacgttca, ceh-36_11, 11, 233, 45

tttccagctgatcgagttgt, ceh-36_12, 12, 257, 45

tactgtgtttcgcggaaaac, ceh-36_13, 13, 279, 45

ttctcttctgtgcacatccg, ceh-36_14, 14, 301, 50

aattgattgccttcgccaat, ceh-36_15, 15, 323, 40

tacttgtacccttccatcag, ceh-36_16, 16, 346, 45

cgatttttgaaccaaaccgt, ceh-36_17, 17, 369, 40

gttgtttctatccttggctc, ceh-36_18, 18, 391, 45

ggatggactccatccatttt, ceh-36_19, 19, 414, 45

ggatgatcttgatgaagtgc, ceh-36_20, 20, 439, 45

attcgttgtgtggagaacca, ceh-36_21, 21, 461, 45

agtgatttagtatcaggctt, ceh-36_22, 22, 483, 35

tgtgcctggtatgtgaattc, ceh-36_23, 23, 505, 45

cactgtgtgcattgaattcc, ceh-36_24, 24, 527, 45

gagtttgcctcatatttggc, ceh-36_25, 25, 549, 45

ttgcagttgactcaagactg, ceh-36_26, 26, 571, 45

tgcaattgctgctgttgctg, ceh-36_27, 27, 594, 50

ctccagttcactttttggct, ceh-36_28, 28, 616, 45

tatctgcaagtggtttcgag, ceh-36_29, 29, 638, 45

gattgagtggaatcgtattt, ceh-36_30, 30, 660, 35

agcttgagcctgaggaagaa, ceh-36_31, 31, 682, 50

ttgcgtaggatgcatatgct, ceh-36_32, 32, 704, 45

ttgtacgggtaaggagcagt, ceh-36_33, 33, 726, 50

tgatgggaagtagctgttgt, ceh-36_34, 34, 748, 45

catattgttggtagtaaaag, ceh-36_35, 35, 770, 30

tttggggtgtaatcgttgct, ceh-36_36, 36, 792, 45

aagtggagagtaggcagtaa, ceh-36_37, 37, 814, 45