Van Oudenaarden Lab:R13A5.5

Progress:

Probes designed: (02-28-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

>R13A5.5 (ceh-13 spliced coding region + 3'-UTR)

atgagctccactgaatgttatggagctcctccccataactattaccaagattggccaacaactcattcttattatccatc agttccttcttcgtattctccactgaatcatcatccagctgatatttgggcagctcatccatccaactacattatgggaa atggccacgtatcaccaccggcaacagcttcaggactttctccgccggcaagtagatcctcgaactcttcagcggagctt ccgacaggggtgacagcatcacagcataacacatacaagtggatgcatacaaaacggtcacaaagaccagctgccccaaa aaagaaggtgatagacgaaaatggaacaaatcgaaccaacttcacaacacatcaactgacagagcttgaaaaggaatttc acacagcaaaatatgtcaatcgaacgagacgaactgaaattgcttcaaatctgaaactgcaggaggctcaggtcaaaatc tggtttcaaaatcgtcgaatgaaggagaaaaagcgtgaaaaagaaaaggcattcctggcccgtaacacatgggaatccaa ctcaccgacatcgtcatgcagtggagaagatgtcaaaaacttcaagtaa

tccatccgt ctccaatctatttttataatttttttgttacctctccatacgcttacttagagctcgacttctaagcgggtaaacttgtc ttgtttccaataattttaattattctaatcagtttttaagacccatgttctcatcgaacaacttccctgaaatttcgctt ctttctcaatcaaatttcgaatgtcttcactcttccacctccatccaaaaatcaatttctcagaaaatatataacaaatt ttgcgcatttttcacatattttcatttctcctcaattaacaatgataacgttacatgaaaatcttactgtacaggaagat gttcagaaaactgtcattttgaattacaatcaagagaattcaactaaaactgaggggtactgtagacgcctcgccccctt tttttggaaagaccggttcgtcatagctgacgtcaatacacataccctcaaaaaatgaaataaagaaag

Name of probe set: ceh-13

Probes designed on Sun, 28 Feb 10 18:56:08 -0700

48 probes designed for target of length 1087

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

taacattcagtggagctcat, ceh-13_1, 1, 1, 40

atagttatggggaggagctc, ceh-13_2, 2, 23, 50

gagttgttggccaatcttgg, ceh-13_3, 3, 45, 50

ggaactgatggataataaga, ceh-13_4, 4, 67, 35

attcagtggagaatacgaag, ceh-13_5, 5, 89, 40

cccaaatatcagctggatga, ceh-13_6, 6, 111, 45

atgtagttggatggatgagc, ceh-13_7, 7, 133, 45

tgatacgtggccatttccca, ceh-13_8, 8, 155, 50

gtcctgaagctgttgccggt, ceh-13_9, 9, 177, 60

gatctacttgccggcggaga, ceh-13_10, 10, 199, 60

aagctccgctgaagagttcg, ceh-13_11, 11, 221, 55

tgtgatgctgtcacccctgt, ceh-13_12, 12, 244, 55

gcatccacttgtatgtgtta, ceh-13_13, 13, 267, 40

ggtctttgtgaccgttttgt, ceh-13_14, 14, 289, 45

caccttcttttttggggcag, ceh-13_15, 15, 311, 50

gatttgttccattttcgtct, ceh-13_16, 16, 333, 35

tgatgtgttgtgaagttggt, ceh-13_17, 17, 355, 40

ttccttttcaagctctgtca, ceh-13_18, 18, 377, 40

tgacatattttgctgtgtga, ceh-13_19, 19, 399, 35

atttcagttcgtctcgttcg, ceh-13_20, 20, 421, 45

ctgcagtttcagatttgaag, ceh-13_21, 21, 443, 40

accagattttgacctgagcc, ceh-13_22, 22, 465, 50

tccttcattcgacgattttg, ceh-13_23, 23, 487, 40

cttttctttttcacgctttt, ceh-13_24, 24, 509, 30

atgtgttacgggccaggaat, ceh-13_25, 25, 531, 50

gatgtcggtgagttggattc, ceh-13_26, 26, 553, 50

gacatcttctccactgcatg, ceh-13_27, 27, 575, 50

ggatggattacttgaagttt, ceh-13_28, 28, 597, 35

attataaaaatagattggag, ceh-13_29, 29, 619, 20

gcgtatggagaggtaacaaa, ceh-13_30, 30, 642, 45

cttagaagtcgagctctaag, ceh-13_31, 31, 665, 45

ggaaacaagacaagtttacc, ceh-13_32, 32, 687, 40

gggtcttaaaaactgattag, ceh-13_33, 33, 723, 35

ggaagttgttcgatgagaac, ceh-13_34, 34, 745, 45

tgagaaagaagcgaaatttc, ceh-13_35, 35, 767, 35

gtgaagacattcgaaatttg, ceh-13_36, 36, 789, 35

gatttttggatggaggtgga, ceh-13_37, 37, 812, 45

gttatatattttctgagaaa, ceh-13_38, 38, 834, 20

atgtgaaaaatgcgcaaaat, ceh-13_39, 39, 856, 30

gttaattgaggagaaatgaa, ceh-13_40, 40, 879, 30

gattttcatgtaacgttatc, ceh-13_41, 41, 902, 30

ctgaacatcttcctgtacag, ceh-13_42, 42, 925, 45

tgtaattcaaaatgacagtt, ceh-13_43, 43, 947, 25

gttttagttgaattctcttg, ceh-13_44, 44, 969, 30

gaggcgtctacagtacccct, ceh-13_45, 45, 991, 60

ggtctttccaaaaaaagggg, ceh-13_46, 46, 1013, 45

ttgacgtcagctatgacgaa, ceh-13_47, 47, 1035, 45

tcattttttgagggtatgtg, ceh-13_48, 48, 1057, 35