IGEM:IMPERIAL/2007/Projects/Biofilm Detector/References

=Infector Detector: References=

 Introduction Specifications Design Modelling Fabrication Testing Data Analysis Validation</li> Notes</li> References</li> </ul> <br style="clear:both">

Publications

 * Introductions and reviews
 * 1) Microniche pmid=8157581
 * 2) Dispersal pmid=11741870
 * 3) Phage pmid=17592147

Heterogeneity of phenotypes

 * 1) Spatial pmid=9758837
 * 2) Layered pmid=2383005
 * 3) Distribution pmid=10473423

Experimental techniques

 * 1) Hybridisation pmid=8633864

Diffusion and flow in biofilms
[Biofilm Mechanics]
 * 1) Review pmid=10099336
 * 2) Flow pmid=16349345
 * 3) Calculation pmid=11788949
 * 4) AHL pmid=11397086

Modelling biofilms

 * 1) Hybrid pmid=10099266
 * 2) Individual pmid=11700341
 * 3) 2D pmid=11137525
 * 4) Quorum pmid=11146885
 * 5) Diffusion pmid=11397086
 * 1) Programmed Population control by Cell-Cell Communication and Regulated Killing

Cell signalling

 * 1) Development pmid=9535661
 * 2) Quorum pmid=12160634
 * 3) Crc pmid=10629189

Gene expression

 * 1) GeneExp pmid=11677611
 * 2) RpoS pmid=11356569

MRSA Specific

 * 1) agr pmid=16465637
 * 2) MRSA-agr pmid=11069241
 * 3) ica pmid=17537178
 * 4) ica2 pmid=10496925
 * 5) detection pmid=11923401
 * 6) icalocus pmid=9746568
 * 7) icadetection pmid=9038293
 * 8) icareg pmid=17419768
 * 9) CountryDoctor Country Doctor
 * 10) Surv pmid=17006805
 * 11) amoeba

Biofilms in the Medical Environment

 * keywords: biofilm, catheter, infection, urinary
 * biofilm on catheters]

Urinary Catheter Specific

 * Guideline for Prevention of Catheter-associated Urinary Tract Infections
 * NHS program on CAUTI
 * 1) urinary-catheter1 pmid=9726901
 * 2) urinary-catheter2 pmid=16850636
 * 3) urinary-catheter3 pmid=10654364
 * 4) urinary-catheter4 pmid=17230395
 * 5) urinary-catheter5 pmid=16843240
 * 6) urinary-catheter6 pmid=17045784
 * 7) urinary-catheter7 pmid=3333661
 * 8) urinary-catheter8 pmid=15153930
 * 9) urinary-catheter9 pmid=16597888
 * 10) urinary-catheter10 pmid=16060714
 * 11) urinary-catheter11 pmid=15923986
 * 12) urinary-catheter12 pmid=15867530
 * 13) urinary-catheter13 pmid=15647698
 * 14) urinary-catheter14 pmid=12848477

General

 * 1) biofilm1 pmid=17046102
 * 2) biofilm2 pmid=3333661
 * 3) biofilm3 pmid=17534791
 * 4) biofilm4 pmid=12194761
 * 5) biofilm5 pmid=11565080
 * 6) biofilm6 pmid=16402262
 * 7) biofilm7 pmid=15037330
 * 8) biofilm8 pmid=11294737
 * 9) biofilm9 pmid=15647698

Biofilm detection using LuxR/pluxI system
http://aem.asm.org/cgi/reprint/67/2/575

Growth of E.coli biofilms in controlled environments
http://inls.ucsd.edu/~volfson/biofilm/

Developmental pathway for biofilm formation in curli-producing Escherichia coli strains: role of flagella, curli and colanic acid. Combaret et al.

http://www.springerlink.com/content/jh442x351242n044/fulltext.pdf

AHL concentration in biofilms
http://www.blackwell-synergy.com/doi/abs/10.1046/j.1462-2920.2000.00136.x

Resources
Imperial College contacts: Web pages:
 * Prof Andrew J Livingston
 * Prof David C Stuckey
 * Dr Dieudonne-Guy Ohandja
 * Biofilms Online
 * Biofilm Hypertextbook
 * With a very rich references section.
 * Biofilms and Medical Devices]