User:Carl Boettiger/Notebook/Stochastic Population Dynamics/2010/06/01

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 * style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]] Stochastic Population Dynamics
 * style="background-color: #F2F2F2" align="center"|  |Main project page
 * style="background-color: #F2F2F2" align="center"|  |Main project page


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Gamma Waiting times on individual level

 * Wrote the proper record structure into C code to handle reporting to R, including ensemble data.
 * Wrote the R interface to the dynamics.
 * Needs exploration.



Version-stable code for parameters. Run using defaults, graph as:


 * Simulation reports actual parameters above, chosen to match the theory results from last week  (linear noise approximation).
 * Comparisons using ensemble data against theory coming soon.
 * Single replicate .c based IBM is currently faster than the ode system (with variance dynamics).
 * Note: Entry and graph above actually added on June 3rd, parameters weren't named correctly on June 1st, so simulation wasn't oscillating.


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