Michael R. Pina Week 4

Activity 1

 * The accession number of the sequence is AF016768.
 * The sequence comes from subject 1; the definition section of the record contains this information as well as other information such as which visit.
 * The Biology Workbench does not seem the most user friendly, but it works just fine and gets the job done. I was able to align 4 sequences acquired from GenBank without any problems.

Part 1: Looking at clustering across subjects
My tree (linked below) shows that at the first visit, clones within each subject are clustered pretty close together which shows that there is not a lot of divergence. Subject 3 shows the most diversity from the others as it it is the furthest from the middle point.

Part 2: Quantifying diversity within and between subjects


Table 3



Table 4

Files
[[Media:Mpina visit 1 S1 S9.txt|Visit 1, subjects 1-9]]

[[Media:Mpina visit 1 S10 S15.txt|Visit 1, subjects 10-15]]

[[Media:Mpina 22196.CLUSTALW.pdf|Tree]]