Tregwiki:Folding Alignments

Don't know much about this domain... here are some links:


 * RNAfold The standard in RNA folding, only one sequence
 * Mfold Good old traditional RNA tool, only one sequence
 * PFold can fold multiple alignments
 * RNAz like RNAfold, strange SVM, but can be applied to the whole genome
 * RNAz predictions conserved in human/mouse/rat/dog/chicken This is a simple bed-file that you can view on UCSC, overlap with anything, very nice data
 * QFold similar to RNAz, slower?


 * Mirscan folding and miRNA prediction