Salomon Garcia: Week 4

Activity 1 Part 1

 * Pubmed:
 * 1) How did you searh for the PubMed entry?
 * 2) What oher ways might you have searched?
 * 3) What other types of related information are available?


 * 1) I searched for the original paper by typing in the entire title of the research paper into the search box and the window showed the paper that was written in 1998.
 * 2) Another way I could have searched for it was by doing an advanced search and using the authors name on the search.
 * 3) There were other information that was useful as was the information that described what HIV-1 is.

Activity 1 Part 2

 * GenBank:
 * 1) What was the accession number of the sequence you chose?
 * 2) Which subject of the study was that HIV sequence from? Which section of the record contains information about who the HIV was collected from?


 * 1) The accession number was GenBank: AF016760.1.
 * 2) This sequence was from subject 1. GenBank and the Fasta both contain where the section of HIV came from.

Activity 1 Part 3

 * In this portion of the activity I used 4 of the sequences from the Markham study. I ran a ClustalW with the Biology workbench website. this was the sequence:
 * This is a pic of the experimental tree:

Activity 2 Part 1

 * Sequences were generated and this is what is seen:


 * A rooted tree was also generated and this is what was shown: