User:James Estevez/Notebook/Spring 2011: Bdellovibrio Independent Study/2011/01/22

{| width="800"
 * style="background-color: #EEE"|[[Image:HD100128.png]] Bdellovibrio Independent Study
 * style="background-color: #F2F2F2" align="center"|  |Main project page
 * style="background-color: #F2F2F2" align="center"|  |Main project page


 * colspan="2"|
 * colspan="2"|

Friday night.

Proposal draft is up the food chain for review. Lab notebook set-up. Need to prep the analysis pipeline:

CloVR

 * 1) Getting familiar with the interface and navigating Hadoop. VirtualBox doesn't seem to want to work, so need to switch to VMware for the project. What do we want to know?
 * 2) AMI prep from inside the VM?
 * 3) Which version?
 * 4) Sample datasets from CloVR and MM.
 * 5) Documentation's pretty thin.

Running the first 16s pipeline

 * Editing clovr_16s.config:


 * Editing clovr_ec2.conf:

The first pass errored out. The mailing list says there needs to be a Vappio script to handle the cluster config. This set-up only started the local cluster. There'll be upstream problems modifying the pipeline, too, I expect.


 * }