User:Nuri Purswani/Notebook/ICBioinfp1/2010/02/01

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QUESTIONS FOR ADVISORS

 * Are we supposed to build a database?- what is the use of us doing this from scratch when there are models available!
 * feedback- MIT database, inaccessible, not bad!- Improve querying/not redesign?
 * Composite parts: Sum of individual parts!!
 * What is wrong with the way that the registry is using DAS?
 * Comparing to other points/ is the wrong part that the registry doesn't let you access external sources?
 * Ask about the API links (XML)- list of entry points, others dont work!
 * What they want us to do in general1
 * MIT ID= limited to MIT
 * DAS queries- not universal
 * Creating a biobrick part- get seq from external source and put in registry, loosing all info from external source.
 * We want to t retrieve that info by creating some sort of "link"
 * HOW?
 * Biobrick ID= only registry
 * Only way to link to external servers- through the sequence!
 * WHY BIOSQL!?- USE THE TEMPLATE!

FEEDBACK FROM GERAINT
-mysql, postgres? - tomcat server- flex. type in url- go to tomcat, etc. (?) --flash objs in flex, put in tomcat. jsp mydb.jsp. - how big database?¿ --few 1000 entries? bss server/web? flex-tomcat-jsp-database. arrghhhhhhh! dazzle- fits into tomcat somewheereee python? jango?

-flex/tomcat/java/mysql

-"BLAST-IN, BLAST OUT!!"
 * STEP1: Build a database "TOY"- parts registry- parser- get info out- plug into SQL (bio/not)?--- design a schema!
 * Use the schema that the registry has- biojade schema. ?
 * STEP2: Querying? How to get info out?
 * GUI- Send queries to the server.
 * AIMS- BUILD A TOY DATABASE- SQL/MYSQL- SCHEMA?

=DECIDE ON AIMS FOR TOMORROW=


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