User:Carl Boettiger/Notebook/Comparative Phylogenetics/2010/03/23

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 * style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]] Comparative Phylogenetics
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 * style="background-color: #F2F2F2" align="center"|  |Main project page


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Bootstrapping Likelihood ratios

 * Bootstraps of the likelihood ratio, holding the parameters fixed, finally completed.

Anoles:

Summary Anoles table:

Labrids:

Note that the location of the red line now just flips sign in the pairwise comparison.


 * Functions for bootstrapping of the likelihood directly also written. Currently running with 1000 replicates.
 * 1) model_bootstrap bootstraps a single model
 * 2) model_bootstrap_all applies this to a list of models
 * 3) plot.model_boots plots the object returned by bootstrapping all models on a single plot axis.


 * Working on a summary function for both LR and likelihood bootstraps.


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