Van Oudenaarden Lab:R03C1.3

Progress:

Probes designed: (2009 - Jialing Li)

Probes tested: success

Dyes available: TMR, Cy5

>R03C1.3a (cog-1 spliced coding region)

atgagcctaatcatgtccgaaccgccacaactcacgacgcccgacgacaaggacgtcgagaatcggaagcactcctccac ctacagtatttcaaatttgttgctcgagaagaaggagtcgagcccgtcgggcagttccagtgaggatgactcggcgagca gcaatgatgatgatcagcggagtccgtcggcaacttcttcattcatttttccgccagcttcatcgtcctcctcgtcggaa agtgccacgtcaccaacacagattatggctcagcttatggcaaatggtggagcagttgacccgggtcttcaggcatactt cttccttctacagtcccagttaaacagccaatcaatgatgaaccgagtaacacaggaaaacgtaagccgagctctcacct ccttcaacctgctcaacaacctgcccggcgcccttccatcactctccccaatggggcgactccagcactcaatgcaactc tccccgaactccctgaacatgcagaagaagcaaagcagacccacattcaccggccatcagatctatcagctggagcggaa gttcgagcaaaccaagtacctagccggagcagatcgtgcacagctcgcccaggagcttaacatgagcgagagtcaagtta aggtgtggttccaaaaccgtcgtacaaaatggcgcaagaaggaagcggccgacaatgcactggtcaaacgtggtgccagc ggcgacaagtctccttgctcactgagcccatttctcagcgctggaatttag

Name of probe set: cog-1 Probes designed on Mon, 01 Mar 10 12:00:33 -0700 30 probes designed for target of length 771

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

tcggacatgattaggctcat, cog-1_1, 1, 1, 45

attctcgacgtccttgtcgt, cog-1_2, 2, 44, 50

aatactgtaggtggaggagt, cog-1_3, 3, 71, 45

ccttcttctcgagcaacaaa, cog-1_4, 4, 96, 45

agtcatcctcactggaactg, cog-1_5, 5, 132, 50

atcatcatcattgctgctcg, cog-1_6, 6, 155, 45

atgaagaagttgccgacgga, cog-1_7, 7, 183, 50

gatgaagctggcggaaaaat, cog-1_8, 8, 205, 45

tgttggtgacgtggcacttt, cog-1_9, 9, 239, 50

ccataagctgagccataatc, cog-1_10, 10, 261, 45

gggtcaactgctccaccatt, cog-1_11, 11, 283, 55

gaagaagtatgcctgaagac, cog-1_12, 12, 305, 45

ctgtttaactgggactgtag, cog-1_13, 13, 328, 45

ctgtgttactcggttcatca, cog-1_14, 14, 356, 45

tgagagctcggcttacgttt, cog-1_15, 15, 378, 50

ttgttgagcaggttgaagga, cog-1_16, 16, 400, 45

attggggagagtgatggaag, cog-1_17, 17, 433, 50

ttgcattgagtgctggagtc, cog-1_18, 18, 458, 50

tctgcatgttcagggagttc, cog-1_19, 19, 486, 50

aatgtgggtctgctttgctt, cog-1_20, 20, 508, 45

tccagctgatagatctgatg, cog-1_21, 21, 535, 45

acttggtttgctcgaacttc, cog-1_22, 22, 558, 45

tgcacgatctgctccggcta, cog-1_23, 23, 581, 60

tcgctcatgttaagctcctg, cog-1_24, 24, 610, 50

gaaccacaccttaacttgac, cog-1_25, 25, 632, 45

gccattttgtacgacggttt, cog-1_26, 26, 654, 45

ttgtcggccgcttccttctt, cog-1_27, 27, 676, 55

tggcaccacgtttgaccagt, cog-1_28, 28, 699, 55

agtgagcaaggagacttgtc, cog-1_29, 29, 724, 50

aattccagcgctgagaaatg, cog-1_30, 30, 749, 45