Biomod/2011/Caltech/DeoxyriboNucleicAwesome/References

=References=

Referenced Papers

 * Alphabetical by First Author

B

 * Baker, B. A., & Milam, V. T. . (2011). Hybridization kinetics between immobilized double-stranded DNA probes and targets containing empedded recognition segments. Nucleic Acids Research, 1-13.
 * Bath, J., Green, S. J, Allen, K. E., & Tuberfield, A. J. (2009). Mechanism for a directional, processive, and reversible DNA motor. Small, 5(13), 1513-1516.
 * Bonnet, G., Krichevsky, O., & Libchaber, A. (1998). Kinetics of conformational fluctuations in DNA haripin-loops. PNAS, 95, 8602-8606.

D

 * Dirks, R. M., Lin, M., Winfree, E., & Pierce, N. A. (2004). Sensitive fluorescence-based thermodynamic and kinetic measurements of DNA hybridization in solutions. Nucleic Acids Research, 32(4), 1392-1403.

F

 * Fujibayashi, K., Hariadi, R., Park, S. H., Winfree, E., & Murata, S. (2007). Toward relaible algorithmic self-assembly of DNA tiles: a fixed-width cellular automaton pattern. Nano Letters, 8(7), 1791-1797.

G

 * Gu, H., Chao, J., Xiao, S., & Seeman, N. C. (2010). A proximity-based programmable DNA nanoscale assembly line. Nature, 465, 202-205.

M

 * Morrison, L. E., & Stols, L. M. . (1993). Sensitive fluorescence-based thermodynamic and kinetic measurements of DNA hybridization in solutions. Biochemestry, 32, 3095-3104.
 * Muscat, R. A., Bath, J., & Tuberfield, A. J. (2011). A programmable molecular robot. Nano Letters, 11, 982-987.

S

 * SantaLucia, J. (1998). A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. PNAS, 95, 1460-1465.

V

 * Venkataraman, S., Dirks, R. M, Rothemund, P. W. K., Winfree, E., & Pierce, N. A. (2007). An autonomous polymerization motor powered by DNA hybridization. Nature Nanotechnology, 1-5.

W

 * Wang, Z., Elbaz, J., Remacle, F., Levine, R. D., & Willner, I. (2010). All-DNA finite-state automata with finite memory. PNAS, 107(51), 21996-22001.
 * Wetmur, J. G. (1991). DNA probes: applications of the principles of nucleic acid hybridization. Critical Reviews in Biochemistry and Molecular Biology, 26(3/4), 227-259.
 * Wickham, S. F. J., Endo, M., Katsuda, Y., Hidaka, K., Bath, J., Sugiyama, H., & Tuberfield, A. J. (2010). Direct observation of stepwise movement of a synthetic molecular transporter. Nature Nanotechnology, 6, 166–169.

Z

 * Zhang, D. Y., & Winfree, E. (2009). Control of DNA strand displacement kinetics using toehold exchange. JACS, 131, 17303-17314.

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