Wikiomics:Mutation/SNP detection

=Mutation/SNP detection=


 * PolyScan ref New program claimed to be superior to MutationSurveyor/PolyPhred/SNPdetector


 * MutationSurveyor $$$ program. 30 days demo available. MS3 has a limit of MS3 400 traces in a single project. GUI. Used in several diagnostic labs.


 * POLYBAYES Perl program. ref


 * InSNP windows only, ABI base calls? detects substitution and indel SNPs in sequencing traces

see (unchecked yet): PolyPhred tutorial
 * PolyPhred [ref http://nar.oxfordjournals.org/cgi/content/full/25/14/2745] 1997 program, integrated with phred and Consed.

=SNP=


 * novoSNP ref Windows/Linux 2.0.3. GUI & command line on Linux.


 * SNPdetector (ftp) ref


 * SNP-PHAGE
 * MAVIANT tool for SNP evaluation and annotation.