User:Grant Shoffner/Notebook/BioE144L Protein Project/2010/10/21

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 * style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]] BioE144L Protein Project
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 * style="background-color: #F2F2F2" align="center"|  |Main project page


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Possible Target Proteins
Putative helicase from the parasitic protist Trypanosoma cruzi. No good, pdb structures within tolerance. Non-structural protein 1 from Human rotavirus A. Possible reverse transcriptase from Trypanosoma cruzi. No close pdb structures and few homologs (rough PSI-BLAST search). Soybean sequence with almost no PDB hits. "late elongated hypocotyl and circadian clock associated-1-like protein 2" Only a few short PDB matches with E>1, and one CDD match to a Transposase domain over a short region. One good PDB structure to a portion of the sequence, and several CDD hits.
 * >tr|Q9XYP4|Q9XYP4_TRYCR Putative pre-mRNA splicing factor ATP-dependent RNA helicase OS=Trypanosoma cruzi GN=TRH1 PE=4 SV=1
 * >tr|B6RGK5|B6RGK5_9REOV NSP1 OS=Human rotavirus A PE=4 SV=1
 * >tr|O62611|O62611_TRYCR TcC31.12 OS=Trypanosoma cruzi GN=TcC31.12 PE=4 SV=1
 * >gi|158999370|gb|ABW87009.1| late elongated hypocotyl and circadian clock associated-1-like protein 2 [Glycine max]
 * >gi|254971801|gb|ACT98136.1| TNP1 [Glycine max]
 * >gi|300676590|gb|ADK26569.1| zeaxanthin epoxidase [Glycine max]


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