Gist

This presentation from the BioMIBLab Summer 2006 Workshop is an analysis bioinformatics tool.

Synopsis

 * Gist is a set of command line programs written in C
 * Primary programs
 * SVM and KPCA


 * Auxiliary programs
 * Ranking and feature selection


 * Web interface for the SVM component

Features

 * Normalizations
 * Column (sample) mean center
 * Column (sample) z-score


 * Classifiers
 * SVM


 * Data Representation
 * Text files
 * HTML output


 * Ranking Methods
 * Fisher criterion
 * T-test
 * SAM
 * Mann-Whitney
 * Welch t-test

Full Presentation
[[Media:Gist.ppt|Gist PowerPoint Presentation]]

Links
Gist Homepage