Beauchamp:RealTimefMRI

Real Time Notes

See case ZAE Notes files for an example of pseudo-real time fMRI


 * 1) !/bin/tcsh

rtfeedme                                                                     \ -drive 'DRIVE_AFNI OPEN_WINDOW axialimage geom=285x285+3+533'              \ -drive 'DRIVE_AFNI OPEN_WINDOW coronalimage geom=421x192+283+534 mont=2x3:2'\ -drive 'DRIVE_AFNI OPEN_WINDOW coronalgraph geom=570x440+868+47 keypress=A' \ -drive 'DRIVE_AFNI SET_SUBBRICKS 0 1 1'                \ -drive 'DRIVE_AFNI SET_DICOM_XYZ 38 42 35'             \ -drive 'DRIVE_AFNI SET_THRESHNEW 0.4'                  \ -dt 100 -3D blur_vr_run1_motor_AFB003+orig


 * 1) !/bin/tcsh

last_file = "" while ( 1 ) if ( -f last.par.file ) then last_file = `cat last.par.file` endif

pfile = `\ls -1tr *.PAR | tail -1`

if ( $pfile != $last_file ) then   # process a new dataset set prefix = $pfile:r 3dPAR2AFNI.pl $pfile echo $pfile > last.par.file if ( -f $prefix+orig.HEAD ) then rtfeedme -drive "DRIVE_AFNI OPENWINDOW axialimage ..." -quit else echo "** failed to convert PAR/REC dataset $pfile" endif endif sleep 5 end