Computational Biology

In Brief
... work in progress ... Feel free to edit and contribute to those pages.

Basic Molecular Reactions Modeling

 * models to document:
 * A -> B
 * A + A -> B
 * A -> 0 (natural degradation/exponential decay)
 * A -(B)-> 0 (active degradation of A by B)
 * 0 -> A -> 0 (synthesis-degradatio

Enzymatic Reactions Modeling

 * One Ligand Full model
 * One Ligand Michaelis-Menten model

Computational_Biology/Gene_Expression_modeling | Gene Expression Modeling]]

 * Gene Expression (Stochastic based)
 * Gene Expression (ODEs based)


 * models to document:
 * constitutive gene expression (ODE based)
 * repressed gene expression (ODE based)
 * activated gene expression (ODE based)
 * negative feedback gene expression (ODE based)
 * positive feedback gene expression (ODE based)
 * delayed gene expression (ODE based)
 * resource limited gene expression (ODE based)

Web Resources

 * E.Coli Statistics
 * BioNumbers
 * great tutorial from Prof Hwa (UCSD) on gene expression
 * Computation for Biological Engineers (MIT OpenCourseWare)
 * Biological Engineering Programming (MIT OpenCourseWare)
 * Computational Techniques and Algorithms (MIT OpenCourseWare)