User:Lindenb/Notebook/UMR915/20110223

=Belgium= fixed problem with ensembl's tool: http://biostar.stackexchange.com/questions/5781/ensembl-variant-effect-predictor-pl-raises-an-error

./variant_effect_predictor.pl --hgnc -i ~/sample1.hg19.vcf --check_ref --format vcf -o ~/sample1.predictions.txt

slow, trying cat /home/lindenb/sample1.hg19.vcf /home/lindenb/sample2.hg19.vcf | cut -d '  ' -f 1-5 | sort | uniq | ./variant_effect_predictor.pl  --format vcf -o ~/variant_effect_out.txt --check_ref --hgnc

=AngelHeart= refectored code to a multi-window env: http://code.google.com/p/code915/source/detail?spec=svn421&r=417