User:James Estevez/Notebook/Spring 2011: Bdellovibrio Independent Study/2011/01/30

{| width="800"
 * style="background-color: #EEE"|[[Image:HD100128.png]] Bdellovibrio Independent Study
 * style="background-color: #F2F2F2" align="center"|  |Main project page
 * style="background-color: #F2F2F2" align="center"|  |Main project page


 * colspan="2"|
 * colspan="2"|

installation on Ubuntu 10.10
I imagine anyone running into this would know what to do, but I had to do some googling to figure it out, so I thought it worthy of inclusion. lists  as a dependency, but attempted installation fails because the   Fortran compiler is deprecated in Ubuntu since 8.04.

Compiling with

returns an error:

In order to fix it one needs to correct the Makefile from

to This allows gtop to compile, but pfmake errors out with:

Now I see that there are precompiled executables on the site. Facepalm. Try again tomorrow.

Glimmer3 results for Bdellovibrio strain W
Ran with default settings against the raw contigs. Attached at User:James_Estevez/Notebook/Spring_2011:_Bdellovibrio_Independent_Study/2011/01/30/Bdellovibrio_strain_W_glimmer3.predict and User:James_Estevez/Notebook/Spring_2011:_Bdellovibrio_Independent_Study/2011/01/30/Bdellovibrio_strain_W_glimmer3.detail


 * }