Van Oudenaarden Lab:F16H11.4

Progress:

Probes designed: (02-28-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

>F16H11.4 (ceh-1 spliced coding region + UTRs)

ctatgaatggctttcgtgtcgaagatttgctatccgaacgggaaaaagactccaactcggatgaagccacgcatcaaaag tctccagctgatggcgggaaatcgagtcggaaactcaaa

atgcggcgagccagaactgcattcacttatgagcaattggttgcgctggaaaacaaattcaagacttcacgttatttgag cgtcgtagagcgtttaaatttggcaattcaacttcagctttctgaaactcaggtaaaaatctggttccaaaaccggcgta ccaagtggaagaaacacaatccgggacaagatgcaaatacgcctcaaaccccaccatcttccgatgaaactcagattcaa ccaattctaccggcaaatcctataacttcatttagttcattgcttttgccgccaataatatctccagcaaactcagcagt tctacaaggaacatccatcccattaacactgttcaacttgaaccaaattctaatgcctcaaaatgtgggcttcaattaa

atggatattttgtttttgttttttttttcggtgtttttttttctcttcttacaa tttgtacgggttctgagcttaaactctgaccgtttaatctattccatttctatcacatgagcttgaaacttggcttaact tatagcccccacacctagtttttaaaacaaccattttagtgtgtagactccggtttctatatctttgaatccacatatct ttctcatttcctgcaatcccatttacccaatacttcaatttcattcaatccggttttattatcgcttgatcgatatgaaa tgtcttaaatacaataaaattggcccatggatcaatgaagtaatgatgattga

Name of probe set: ceh-1

Probes designed on Sun, 28 Feb 10 18:16:11 -0700

39 probes designed for target of length 865 (target too short for 48 probes)

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

gacacgaaagccattcatag, ceh-1_1, 1, 1, 45

cccgttcggatagcaaatct, ceh-1_2, 2, 23, 50

tcatccgagttggagtcttt, ceh-1_3, 3, 45, 45

tggagacttttgatgcgtgg, ceh-1_4, 4, 67, 50

gactcgatttcccgccatca, ceh-1_5, 5, 89, 55

gctcgccgcattttgagttt, ceh-1_6, 6, 111, 50

ctcataagtgaatgcagttc, ceh-1_7, 7, 133, 40

tgttttccagcgcaaccaat, ceh-1_8, 8, 155, 45

aaataacgtgaagtcttgaa, ceh-1_9, 9, 177, 30

atttaaacgctctacgacgc, ceh-1_10, 10, 199, 45

aaagctgaagttgaattgcc, ceh-1_11, 11, 221, 40

cagatttttacctgagtttc, ceh-1_12, 12, 243, 35

cttggtacgccggttttgga, ceh-1_13, 13, 265, 55

gtcccggattgtgtttcttc, ceh-1_14, 14, 287, 50

gtttgaggcgtatttgcatc, ceh-1_15, 15, 309, 45

agtttcatcggaagatggtg, ceh-1_16, 16, 331, 45

ccggtagaattggttgaatc, ceh-1_17, 17, 353, 45

ctaaatgaagttataggatt, ceh-1_18, 18, 375, 25

tattggcggcaaaagcaatg, ceh-1_19, 19, 397, 45

ctgctgagtttgctggagat, ceh-1_20, 20, 419, 50

gggatggatgttccttgtag, ceh-1_21, 21, 441, 50

gttcaagttgaacagtgtta, ceh-1_22, 22, 463, 35

cattttgaggcattagaatt, ceh-1_23, 23, 485, 30

atatccatttaattgaagcc, ceh-1_24, 24, 507, 30

cgaaaaaaaaaacaaaaaca, ceh-1_25, 25, 529, 20

gtaagaagagaaaaaaaaac, ceh-1_26, 26, 551, 25

aagctcagaacccgtacaaa, ceh-1_27, 27, 573, 45

atagattaaacggtcagagt, ceh-1_28, 28, 595, 35

aagctcatgtgatagaaatg, ceh-1_29, 29, 617, 35

gctataagttaagccaagtt, ceh-1_30, 30, 639, 35

gttttaaaaactaggtgtgg, ceh-1_31, 31, 661, 35

gagtctacacactaaaatgg, ceh-1_32, 32, 683, 40

ggattcaaagatatagaaac, ceh-1_33, 33, 705, 30

gcaggaaatgagaaagatat, ceh-1_34, 34, 727, 35

gaagtattgggtaaatggga, ceh-1_35, 35, 749, 40

taaaaccggattgaatgaaa, ceh-1_36, 36, 771, 30

catttcatatcgatcaagcg, ceh-1_37, 37, 795, 40

gggccaattttattgtattt, ceh-1_38, 38, 819, 30

catcattacttcattgatcc, ceh-1_39, 39, 841, 35