Imperial College/Courses/Spring2008/Synthetic Biology/Computer Modelling Practicals/CellDesigner Tutorial

 CellDesigner Tutorial  Overview GUI Compounds Reactions Kinetic Model Simulation Panel Example  <br style="clear:both">

Cell Designer Features

 * Biochemical, Gene Regulatory Networks Modeling with GUI
 * Visual Representation of Biochemical Semantics
 * SBML Compliant
 * Direct integration with SBML ODE Solver
 * Free download (Win32, OSX, Linux)

Our Objectives

 * To get familiar with a new modelling tool (standard annotation and kinetic simulation).
 * To use the software to explore the behaviour of simple genetic network motifs.
 * To be able to build and simulate new, and more complex, genetic networks (such as the ones you will build later in the course).

Resources

 * CellDesigner Website
 * Quick Tutorial (HTML format)
 * Tutorials (PDF format)