Dahlquist:Notebook/Nutrigenomics/2009/11/12

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 * style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]] Nutrigenomics
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Entry title
11/12/2009

Treat this array type as 'Expression' Read in existing binary CDF file C:\Documents and Settings\sspeiche\Desktop\TrampData\Mouse430_2.cdf.bin (file format 4)...
 * 1) Downloaded dChip software from the internet
 * 2) Found the Affymetrix chip that was used in the study (GeneChip Mouse Genome 430 2.0 arrays)in .cdf form
 * 3) Attempted to convert the data received from McCarthy et al into dChip compatible data (.dcp)
 * 4) Wasn't finding the files, so went into original folders from the paper and checked and unchecked "Read Only" and clicked "Apply"
 * 5) Went back into dChip tried to convert all of the .CEL files into .dcp files
 * 6) The files still did not convert into the .dcp file
 * 7) The following error message appeared upon trying to convert into the .dcp format
 * 8) Error Message

Search and extract 'CEL' probe data files of chip type 'Mouse430_2' in 'C:\Documents and Settings\sspeiche\Desktop\TrampData'...

Found C:\Documents and Settings\sspeiche\Desktop\TrampData\1_12 wk_TRAMP.CEL Accessing '1_12 wk_TRAMP.dcp' (file format 4) Found C:\Documents and Settings\sspeiche\Desktop\TrampData\1_12 wk_TRAMP_treated.CEL Have the same time tag [] as 'C:\Documents and Settings\sspeiche\Desktop\TrampData\1_12 wk_TRAMP.CEL', ignored; or uncheck 'Open group/options/Check CEL file time tag' Found C:\Documents and Settings\sspeiche\Desktop\TrampData\1_12 wk_WILD.CEL Have the same time tag [] as 'C:\Documents and Settings\sspeiche\Desktop\TrampData\1_12 wk_TRAMP.CEL', ignored; or uncheck 'Open group/options/Check CEL file time tag' Found C:\Documents and Settings\sspeiche\Desktop\TrampData\1_17 wk_TRAMP.CEL Have the same time tag [] as 'C:\Documents and Settings\sspeiche\Desktop\TrampData\1_12 wk_TRAMP.CEL', ignored; or uncheck 'Open group/options/Check CEL file time tag' Found C:\Documents and Settings\sspeiche\Desktop\TrampData\1_17 wk_TRAMP_treated.CEL Have the same time tag [] as 'C:\Documents and Settings\sspeiche\Desktop\TrampData\1_12 wk_TRAMP.CEL', ignored; or uncheck 'Open group/options/Check CEL file time tag'


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